Author details

Full Name

Aaron K Wong

Affiliation

Flatiron Institute, Simons Foundation

ORCID

Career Start Year

2004

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37703883	Atlas of primary cell-type-specific sequence models of gene expression and variant effects.	Cell Rep Methods	2023
35817977	A sequence-based global map of regulatory activity for deciphering human genetics.	Nat Genet	2022
35477557	Molecular Characterization of Membranous Nephropathy.	J Am Soc Nephrol	2022
33462483	Genome-wide landscape of RNA-binding protein target site dysregulation reveals a major impact on psychiatric disorder risk.	Nat Genet	2021
33888512	Modeling transcriptional regulation of model species with deep learning.	Genome Res	2021
33689683	Tissue-specific enhancer functional networks for associating distal regulatory regions to disease.	Cell Syst	2021
34428401	Spatial transcriptional mapping of the human nephrogenic program.	Dev Cell	2021
34341555	Decoding disease: from genomes to networks to phenotypes.	Nat Rev Genet	2021
32511461	SARS-CoV-2 receptor networks in diabetic and COVID-19 associated kidney disease.	medRxiv	2020
33038424	SARS-CoV-2 receptor networks in diabetic and COVID-19-associated kidney disease.	Kidney Int	2020
31133750	Whole-genome deep-learning analysis identifies contribution of noncoding mutations to autism risk.	Nat Genet	2019
30478325	Interpretation of an individual functional genomics experiment guided by massive public data.	Nat Methods	2018
29800226	GIANT 2.0: genome-scale integrated analysis of gene networks in tissues.	Nucleic Acids Res	2018
30013180	Deep learning sequence-based ab initio prediction of variant effects on expression and disease risk.	Nat Genet	2018
30003887	Enabling Precision Medicine through Integrative Network Models.	J Mol Biol	2018
30346941	An integrative tissue-network approach to identify and test human disease genes.	Nat Biotechnol	2018
26788126	Network-based analysis of genetic variants associated with hippocampal volume in Alzheimer's disease: a study of ADNI cohorts.	BioData Min	2016
27479844	Genome-wide prediction and functional characterization of the genetic basis of autism spectrum disorder.	Nat Neurosci	2016
27098035	GIANT API: an application programming interface for functional genomics.	Nucleic Acids Res	2016
25581801	Targeted exploration and analysis of large cross-platform human transcriptomic compendia.	Nat Methods	2015
26362267	Interactive Big Data Resource to Elucidate Human Immune Pathways and Diseases.	Immunity	2015
25915600	Understanding multicellular function and disease with human tissue-specific networks.	Nat Genet	2015
25969450	IMP 2.0: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networks.	Nucleic Acids Res	2015
25940632	FNTM: a server for predicting functional networks of tissues in mouse.	Nucleic Acids Res	2015
25786808	Low-variance RNAs identify Parkinson's disease molecular signature in blood.	Mov Disord	2015
25431329	Tissue-aware data integration approach for the inference of pathway interactions in metazoan organisms.	Bioinformatics	2015
23134432	A de novo mutation in KIT causes white spotting in a subpopulation of German Shepherd dogs.	Anim Genet	2013
23516347	Functional knowledge transfer for high-accuracy prediction of under-studied biological processes.	PLoS Comput Biol	2013
22684505	IMP: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networks.	Nucleic Acids Res	2012
23028291	Tissue-specific functional networks for prioritizing phenotype and disease genes.	PLoS Comput Biol	2012
23134304	Marker panels for genealogy-based mapping, breed demographics, and inference-of-ancestry in the dog.	Anim Biotechnol	2012
20080661	Tracking footprints of artificial selection in the dog genome.	Proc Natl Acad Sci U S A	2010
20862248	An ADAMTSL2 founder mutation causes Musladin-Lueke Syndrome, a heritable disorder of beagle dogs, featuring stiff skin and joint contractures.	PLoS One	2010
20403140	Necrotizing meningoencephalitis of Pug dogs associates with dog leukocyte antigen class II and resembles acute variant forms of multiple sclerosis.	Tissue Antigens	2010
19966068	A comprehensive linkage map of the dog genome.	Genetics	2010
19392818	DOGSET: pre-designed primer sets for fine-scale mapping and DNA sequence interrogation in the dog.	Anim Genet	2009
19713490	Coat variation in the domestic dog is governed by variants in three genes.	Science	2009
15289602	Breed distribution and history of canine mdr1-1Delta, a pharmacogenetic mutation that marks the emergence of breeds from the collie lineage.	Proc Natl Acad Sci U S A	2004

1 - 38 of 38

Hao Hu

Aerospace Center Hospital

Career Start Year 2011

Number of shared co-authors 0

Peilin Jia

Center for Precision Health, The University of Texas Health Science Center at Houston

Career Start Year 2006

Number of shared co-authors 1

Sara Mostafavi

University of British Columbia and BC Children's Hospital

Career Start Year 2006

Number of shared co-authors 2

Ali Torkamani

Scripps Science Institute

Career Start Year 2005

Number of shared co-authors 2

Justin Paschall

National Human Genome Research Institute, National Institutes of Health

Career Start Year 2004

Number of shared co-authors 0

Anthony A Philippakis

Broad Institute of Harvard and the Massachusetts Institute of Technology

Career Start Year 2004

Number of shared co-authors 1

Bin Zhang

Graduate School of Medicine, The University of Tokyo

Career Start Year 2004

Number of shared co-authors 1

Manolis Kellis

Massachusetts Institute of Technology

Career Start Year 2003

Number of shared co-authors 5

Sek Won Kong

Boston Children's Hospital, Seoul National University, Seoul National University Hospital

Career Start Year 2003

Number of shared co-authors 1

Yufeng Shen

Columbia University

Career Start Year 2002

Number of shared co-authors 4

Haiyuan Yu

Weill Institute for Cell and Molecular Biology, Cornell University

Career Start Year 2001

Number of shared co-authors 0

Kai Wang

University of Pennsylvania

Career Start Year 2001

Number of shared co-authors 1

Gary D Bader

University of Toronto

Career Start Year 2000

Number of shared co-authors 2

Paul Flicek

European Bioinformatics Institute

Career Start Year 1999

Number of shared co-authors 3

Frederick P Roth

University of Toronto

Career Start Year 1998

Number of shared co-authors 6

Eric E Schadt

Icahn School of Medicine at Mount Sinai

Career Start Year 1998

Number of shared co-authors 8

Yan Cui

University of Tennessee Health Science Center

Career Start Year 1998

Number of shared co-authors 0

Melissa S Cline

Genomics Institute, University of California Santa Cruz

Career Start Year 1997

Number of shared co-authors 0

Shannon K McWeeney

Oregon Health & Science University, University of California Berkeley

Career Start Year 1997

Number of shared co-authors 2

Nicole L Washington

Renaissance Computing Institute, University of North Carolina

Career Start Year 1997

Number of shared co-authors 0

Damian Smedley

William Harvey Research Institute, Queen Mary University of London

Career Start Year 1996

Number of shared co-authors 1

Jared C Roach

Institute for Systems Biology

Career Start Year 1995

Number of shared co-authors 2

Peter N Robinson

William Harvey Research Institute, Queen Mary University of London

Career Start Year 1995

Number of shared co-authors 4

Steven J M Jones

University of British Columbia

Career Start Year 1995

Number of shared co-authors 1

Kerstin Lindblad-Toh

Uppsala University

Career Start Year 1992

Number of shared co-authors 3

Winston Hide

Harvard Medical School

Career Start Year 1991

Number of shared co-authors 4

Robert Gentleman

Center for Computational Biomedicine, Harvard Medical School

Career Start Year 1991

Number of shared co-authors 1

Gustavo Glusman

Institute for Systems Biology

Career Start Year 1988

Number of shared co-authors 2

Eric S Lander

Vanderbilt-Ingram Cancer Center, Vanderbilt University

Career Start Year 1986

Number of shared co-authors 4

Kelly A Frazer

University of California, USA Institute for Genomic Medicine

Career Start Year 1967

Number of shared co-authors 2

row(s) 1 - 30 of 30

Olga G Troyanskaya

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Co-authored papers 28

Chandra L Theesfeld

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Co-authored papers 9

Christopher Y Park

NYU Robert I. Grossman School of Medicine

Co-authored papers 8

Arjun Krishnan

Michigan State University

Co-authored papers 8

Casey S Greene

Co-authored papers 5

Casey S Greene

Dartmouth College Geisel School of Medicine, Princeton University, University of Colorado Anschutz Medical Campus, University of Pennsylvania Perelman School of Medicine

Co-authored papers 5

Stuart C Sealfon

Icahn School of Medicine at Mount Sinai

Co-authored papers 4

Ran Zhang

University of Wisconsin School of Medicine and Public Health

Co-authored papers 4

Elena Zaslavsky

Icahn School of Medicine at Mount Sinai

Co-authored papers 3

Rajasree Menon

University of Michigan Medical School ann arbor