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Author Details

Veit Schw??mmle
University of Southern Denmark
2003
80
24
Mohammad Sadnan Al Manir (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
38038272WOMBAT-P: Benchmarking Label-Free Proteomics Data Analysis Workflows.J Proteome Res2024
367340952023 Special Issue on Software Tools and Resources: Accelerating Research with New and Evolving Open Source Software.J Proteome Res2023
36744821Toward an Integrated Machine Learning Model of a Proteomics Experiment.J Proteome Res2023
34636883MS2AI: automated repurposing of public peptide LC-MS data for machine learning applications.Bioinformatics2022
37983748Variability analysis of LC-MS experimental factors and their impact on machine learning.Gigascience2022
35696085Exploration of Protein Posttranslational Modification Landscape and Cross Talk with CrossTalkMapper.Methods Mol Biol2022
35561162VIQoR: a web service for visually supervised protein inference and protein quantification.Bioinformatics2022
35259090Distinct and diverse chromatin proteomes of ageing mouse organs reveal protein signatures that correlate with physiological functions.Elife2022
33950508A Tutorial for Variance-Sensitive Clustering and the Quantitative Analysis of Protein Complexes.Methods Mol Biol2021
33900934Quantifying Online News Media Coverage of the COVID-19 Pandemic: Text Mining Study and Resource.J Med Internet Res2021
33506265biotoolsSchema: a formalized schema for bioinformatics software description.Gigascience2021
33720735APE in the Wild: Automated Exploration of Proteomics Workflows in the bio.tools Registry.J Proteome Res2021
33720718Proteomics Software in bio.tools: Coverage and Annotations.J Proteome Res2021
34615866A proteomics sample metadata representation for multiomics integration and big data analysis.Nat Commun2021
34433960The AIMe registry for artificial intelligence in biomedical research.Nat Methods2021
34804501Perspectives on automated composition of workflows in the life sciences.F1000Res2021
34236655Analysis of Label-Based Quantitative Proteomics Data Using IsoProt.Methods Mol Biol2021
34260375Correction: Quantifying Online News Media Coverage of the COVID-19 Pandemic: Text Mining Study and Resource.J Med Internet Res2021
31624831Community curation of bioinformatics software and data resources.Brief Bioinform2020
31935065Middle-Down Proteomic Analyses with Ion Mobility Separations of Endogenous Isomeric Proteoforms.Anal Chem2020
31978537Visualization of the dynamics of histone modifications and their crosstalk using PTM-CrossTalkMapper.Methods2020
31913853JIB.tools 2.0 - A Bioinformatics Registry for Journal Published Tools with Interoperability to bio.tools.J Integr Bioinform2020
32823483Phosphoproteomic Analysis of Rat Neutrophils Shows the Effect of Intestinal Ischemia/Reperfusion and Preconditioning on Kinases and Phosphatases.Int J Mol Sci2020
32327964A Genome-Wide Integrative Association Study of DNA Methylation and Gene Expression Data and Later Life Cognitive Functioning in Monozygotic Twins.Front Neurosci2020
32518069Depolarization-dependent Induction of Site-specific Changes in Sialylation on <i>N-</i>linked Glycoproteins in Rat Nerve Terminals.Mol Cell Proteomics2020
32424025PolySTest: Robust Statistical Testing of Proteomics Data with Missing Values Improves Detection of Biologically Relevant Features.Mol Cell Proteomics2020
30626316CoExpresso: assess the quantitative behavior of protein complexes in human cells.BMC Bioinformatics2019
31890545Proceedings of the EuBIC Winter School 2019.EuPA Open Proteom2019
31760169Quantitative Proteomic Map of the Trypanosomatid Strigomonas culicis: The Biological Contribution of its Endosymbiotic Bacterium.Protist2019
30060113Automated workflow composition in mass spectrometry-based proteomics.Bioinformatics2019
31239345A <i>Lotus japonicus</i> cytoplasmic kinase connects Nod factor perception by the NFR5 LysM receptor to nodulation.Proc Natl Acad Sci U S A2019
31405382The bio.tools registry of software tools and data resources for the life sciences.Genome Biol2019
31429284One Thousand and One Software for Proteomics: Tales of the Toolmakers of Science.J Proteome Res2019
31447428ComplexBrowser: A Tool for Identification and Quantification of Protein Complexes in Large-scale Proteomics Datasets.Mol Cell Proteomics2019
30855969IsoProt: A Complete and Reproducible Workflow To Analyze iTRAQ/TMT Experiments.J Proteome Res2019
29397739ProForma: A Standard Proteoform Notation.J Proteome Res2018
29864591Proceedings of the EuBIC developer's meeting 2018.J Proteomics2018
30237853Distinct urinary glycoprotein signatures in prostate cancer patients.Oncotarget2018
30252444Maximizing Sequence Coverage in Top-Down Proteomics By Automated Multimodal Gas-Phase Protein Fragmentation.Anal Chem2018
30063333Extensive Characterization of Heavily Modified Histone Tails by 193 nm Ultraviolet Photodissociation Mass Spectrometry via a Middle-Down Strategy.Anal Chem2018
30555831Analysis of the Effect of Intestinal Ischemia and Reperfusion on the Rat Neutrophils Proteome.Front Mol Biosci2018
29635359VSClust: feature-based variance-sensitive clustering of omics data.Bioinformatics2018
27208787Neutrophil proteomic analysis reveals the participation of antioxidant enzymes, motility and ribosomal proteins in the prevention of ischemic effects by preconditioning.J Proteomics2017
28385664Proceedings of the EuBIC Winter School 2017.J Proteomics2017
28150251Computational and Statistical Methods for High-Throughput Mass Spectrometry-Based PTM Analysis.Methods Mol Biol2017
28934504Accumulation of histone variant H3.3 with age is associated with profound changes in the histone methylation landscape.Nucleic Acids Res2017
28713550A community proposal to integrate proteomics activities in ELIXIR.F1000Res2017
27717184Nuclear phosphoproteome analysis of 3T3-L1 preadipocyte differentiation reveals system-wide phosphorylation of transcriptional regulators.Proteomics2017
26791339High-performance hybrid Orbitrap mass spectrometers for quantitative proteome analysis: Observations and implications.Proteomics2016
26538599Tools and data services registry: a community effort to document bioinformatics resources.Nucleic Acids Res2016
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Collaborators

Ole N Jensen
VILLUM Center for Bioanalytical Sciences, University of Southern Denmark
Co-authored papers 22
Jon Ison
Institut Francais de Bioinformatique, CNRS
Co-authored papers 9
Simone Sidoli
Co-authored papers 9
Magnus Palmblad
Center for Proteomics and Metabolomics, Leiden University Medical Center
Co-authored papers 8
Hans Ienasescu
Technical University of Denmark
Co-authored papers 7
Martin R Larsen
University of Southern Denmark
Co-authored papers 7
Julian Uszkoreit
Ruhr University Bochum
Co-authored papers 6
Mat???? Kala??
University of Bergen
Co-authored papers 5
Herv?? M??nager
Institut Francais de Bioinformatique
Co-authored papers 5
Juan Antonio Vizca??no
EMBL-European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 5
Anna-Lena Lamprecht
Institute of Computer Science, University of Potsdam
Co-authored papers 4
Kristian Helin
The Institute of Cancer Research
Co-authored papers 3
Wout Bittremieux
University of Antwerp
Co-authored papers 3
Rafael C Jimenez
European Bioinformatics Institute
Co-authored papers 3
F??bio C S Nogueira
Institute of Chemistry, Federal University of Rio de Janeiro
Co-authored papers 3
Steffen M??ller
Rostock University Medical Center
Co-authored papers 2
Eric W Deutsch
Institute for Systems Biology
Co-authored papers 2
Niall Beard
The University of Manchester
Co-authored papers 2
Lennart Martens
Co-authored papers 2
Oliver Kohlbacher
Max Planck Institute for Developmental Biology
Co-authored papers 2
Salvador Capella-Gutierrez
Spanish National Bioinformatics Institute (INB/ELIXIR-ES)
Co-authored papers 2
S??ren Brunak
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen
Co-authored papers 2
Hedi Peterson
Institute of Computer Science, University of Tartu
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Gilberto B Domont
Institute of Chemistry, Federal University of Rio de Janeiro
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Gianni Cesareni
University of Rome 'Tor Vergata'
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Rita Casadio
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Release 1.2