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Author Details

Daniel J B Clarke
Icahn School of Medicine at Mount Sinai
2018
27
9
PMIDPaper TitleJournal TitlePublished Year
36869839lncHUB2: aggregated and inferred knowledge about human and mouse lncRNAs.Database (Oxford)2023
37082798Computational screen to identify potential targets for immunotherapeutic identification and removal of senescence cells.Aging Cell2023
37460679Toxicology knowledge graph for structural birth defects.Commun Med (Lond)2023
36874981PrismEXP: gene annotation prediction from stratified gene-gene co-expression matrices.PeerJ2023
36869839lncHUB2: aggregated and inferred knowledge about human and mouse lncRNAs.Database (Oxford)2023
37166973Enrichr-KG: bridging enrichment analysis across multiple libraries.Nucleic Acids Res2023
37166966GeneRanger and TargetRanger: processed gene and protein expression levels across cells and tissues for target discovery.Nucleic Acids Res2023
37460679Toxicology knowledge graph for structural birth defects.Commun Med (Lond)2023
37082798Computational screen to identify potential targets for immunotherapeutic identification and removal of senescence cells.Aging Cell2023
37166973Enrichr-KG: bridging enrichment analysis across multiple libraries.Nucleic Acids Res2023
37166966GeneRanger and TargetRanger: processed gene and protein expression levels across cells and tissues for target discovery.Nucleic Acids Res2023
36874981PrismEXP: gene annotation prediction from stratified gene-gene co-expression matrices.PeerJ2023
35085427Getting Started with the IDG KMC Datasets and Tools.Curr Protoc2022
35524556SigCom LINCS: data and metadata search engine for a million gene expression signatures.Nucleic Acids Res2022
36100892Transforming L1000 profiles to RNA-seq-like profiles with deep learning.BMC Bioinformatics2022
35945222Connecting omics signatures and revealing biological mechanisms with iLINCS.Nat Commun2022
35876555Getting Started with LINCS Datasets and Tools.Curr Protoc2022
35368424Gene and drug landing page aggregator.Bioinform Adv2022
36207580A multi-omic analysis of MCF10A cells provides a resource for integrative assessment of ligand-mediated molecular and phenotypic responses.Commun Biol2022
36384094Gene set predictor for post-treatment Lyme disease.Cell Rep Med2022
35183110DrugShot: querying biomedical search terms to retrieve prioritized lists of small molecules.BMC Bioinformatics2022
35085427Getting Started with the IDG KMC Datasets and Tools.Curr Protoc2022
35368424Gene and drug landing page aggregator.Bioinform Adv2022
35524556SigCom LINCS: data and metadata search engine for a million gene expression signatures.Nucleic Acids Res2022
36207580A multi-omic analysis of MCF10A cells provides a resource for integrative assessment of ligand-mediated molecular and phenotypic responses.Commun Biol2022
36100892Transforming L1000 profiles to RNA-seq-like profiles with deep learning.BMC Bioinformatics2022
36384094Gene set predictor for post-treatment Lyme disease.Cell Rep Med2022
35945222Connecting omics signatures and revealing biological mechanisms with iLINCS.Nat Commun2022
35876555Getting Started with LINCS Datasets and Tools.Curr Protoc2022
35183110DrugShot: querying biomedical search terms to retrieve prioritized lists of small molecules.BMC Bioinformatics2022
33748796Appyters: Turning Jupyter Notebooks into data-driven web apps.Patterns (N Y)2021
33748796Appyters: Turning Jupyter Notebooks into data-driven web apps.Patterns (N Y)2021
33787872Drugmonizome and Drugmonizome-ML: integration and abstraction of small molecule attributes for drug enrichment analysis and machine learning.Database (Oxford)2021
33780170Gene Set Knowledge Discovery with Enrichr.Curr Protoc2021
33763080Predicting Lyme Disease From Patients' Peripheral Blood Mononuclear Cells Profiled With RNA-Sequencing.Front Immunol2021
33763080Predicting Lyme Disease From Patients' Peripheral Blood Mononuclear Cells Profiled With RNA-Sequencing.Front Immunol2021
33787872Drugmonizome and Drugmonizome-ML: integration and abstraction of small molecule attributes for drug enrichment analysis and machine learning.Database (Oxford)2021
33780170Gene Set Knowledge Discovery with Enrichr.Curr Protoc2021
32156561Interoperable RNA-Seq analysis in the cloud.Biochim Biophys Acta Gene Regul Mech2020
32277816EnrichrBot: Twitter bot tracking tweets about human genes.Bioinformatics2020
32156561Interoperable RNA-Seq analysis in the cloud.Biochim Biophys Acta Gene Regul Mech2020
31701147LINCS Data Portal 2.0: next generation access point for perturbation-response signatures.Nucleic Acids Res2020
32702729The COVID-19 Gene and Drug Set Library.Res Sq2020
32838343The COVID-19 Drug and Gene Set Library.Patterns (N Y)2020
32604670Towards Intelligent Integration and Sharing of Stem Cell Research Data.Stud Health Technol Inform2020
31701147LINCS Data Portal 2.0: next generation access point for perturbation-response signatures.Nucleic Acids Res2020
32838343The COVID-19 Drug and Gene Set Library.Patterns (N Y)2020
32604670Towards Intelligent Integration and Sharing of Stem Cell Research Data.Stud Health Technol Inform2020
32702729The COVID-19 Gene and Drug Set Library.Res Sq2020
32277816EnrichrBot: Twitter bot tracking tweets about human genes.Bioinformatics2020
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Collaborators

Avi Ma'ayan
Icahn School of Medicine at Mount Sinai
Co-authored papers 27
Alexander Lachmann
Co-authored papers 15
Kathleen M Jagodnik
Massachusetts General Hospital Department of Psychiatry, Harvard Medical School.
Co-authored papers 10
Sherry L Jenkins
Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai
Co-authored papers 8
Maxim V Kuleshov
Co-authored papers 8
Minji Jeon
Korea University College of Medicine
Co-authored papers 8
Stephan C Sch??rer
Institute for Data Science and Computing, University of Miami
Co-authored papers 5
Denis Torre
Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai
Co-authored papers 4
John Erol Evangelista
Co-authored papers 4
Mario Medvedovic
Co-authored papers 3
Dušica VidoviĿ
Co-authored papers 3
Jessica L Binder
Co-authored papers 2
Amar Koleti
Co-authored papers 2
Daniel J Cooper
Miller School of Medicine, University of Miami
Co-authored papers 2
John N Aucott
Co-authored papers 2
Marcin Pilarczyk
Co-authored papers 2
Vasileios Stathias
Co-authored papers 2
Mark J Soloski
Co-authored papers 2
Laura B Ferguson
Co-authored papers 2
Brian M Schilder
UK Dementia Research Institute, Imperial College London
Co-authored papers 2
Moshe C Silverstein
Hunter College of The City University of New York
Co-authored papers 2
Jeremy J Yang
Co-authored papers 2
Tudor I Oprea
Expert Systems Inc.
Co-authored papers 2
Alison W Rebman
Co-authored papers 2
Cristian G Bologa
University of New Mexico School of Medicine
Co-authored papers 2
Eryk Kropiwnicki
Co-authored papers 1
Eryk Kropiwnicki
Co-authored papers 1
Zhuorui Xie
Co-authored papers 1
Zhuorui Xie
Co-authored papers 1
Christophe G Lambert
University of New Mexico
Co-authored papers 1
Release 1.2