Author details

Full Name

Iman Hajirasouliha

Affiliation

Institute for Computational Biomedicine

ORCID

Career Start Year

2008

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36543475	A non-invasive artificial intelligence approach for the prediction of human blastocyst ploidy: a retrospective model development and validation study.	Lancet Digit Health	2023
37641111	Ariadne: synthetic long read deconvolution using assembly graphs.	Genome Biol	2023
36959322	Cue: a deep-learning framework for structural variant discovery and genotyping.	Nat Methods	2023
35233546	System-wide transcriptome damage and tissue identity loss in COVID-19 patients.	Cell Rep Med	2022
35644123	Weakly-supervised tumor purity prediction from frozen H&E stained slides.	EBioMedicine	2022
34406356	coronaSPAdes: from biosynthetic gene clusters to RNA viral assemblies.	Bioinformatics	2021
33719168	A Deep Learning Approach to Diagnostic Classification of Prostate Cancer Using Pathology-Radiology Fusion.	J Magn Reson Imaging	2021
33712587	Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions.	Nat Commun	2021
33758858	Systemic Tissue and Cellular Disruption from SARS-CoV-2 Infection revealed in COVID-19 Autopsies and Spatial Omics Tissue Maps.	bioRxiv	2021
31584621	Meltos: multi-sample tumor phylogeny reconstruction for structural variants.	Bioinformatics	2020
33160516	Predictive modeling in reproductive medicine: Where will the future of artificial intelligence research take us?	Fertil Steril	2020
33160512	Precision medicine and artificial intelligence: overview and relevance to reproductive medicine.	Fertil Steril	2020
33297943	gpps: an ILP-based approach for inferring cancer progression with mutation losses from single cell data.	BMC Bioinformatics	2020
32591764	Publisher Correction: Building an international consortium for tracking coronavirus health status.	Nat Med	2020
32699374	Author Correction: A robust benchmark for detection of germline large deletions and insertions.	Nat Biotechnol	2020
32541955	A robust benchmark for detection of germline large deletions and insertions.	Nat Biotechnol	2020
32511352	Shotgun Transcriptome and Isothermal Profiling of SARS-CoV-2 Infection Reveals Unique Host Responses, Viral Diversification, and Drug Interactions.	bioRxiv	2020
32192518	VALOR2: characterization of large-scale structural variants using linked-reads.	Genome Biol	2020
30523036	Minerva: an alignment- and reference-free approach to deconvolve Linked-Reads for metagenomics.	Genome Res	2019
31304368	Deep learning enables robust assessment and selection of human blastocysts after in vitro fertilization.	NPJ Digit Med	2019
31039798	The tech for the next decade: promises and challenges in genome biology.	Genome Biol	2019
31167637	BAMSE: Bayesian model selection for tumor phylogeny inference among multiple samples.	BMC Bioinformatics	2019
31160374	BiosyntheticSPAdes: reconstructing biosynthetic gene clusters from assembly graphs.	Genome Res	2019
29292031	Deep Convolutional Neural Networks Enable Discrimination of Heterogeneous Digital Pathology Images.	EBioMedicine	2018
29927069	Using LICHeE and BAMSE for Reconstructing Cancer Phylogenetic Trees.	Curr Protoc Bioinformatics	2018
25944252	Fast and scalable inference of multi-sample cancer lineages.	Genome Biol	2015
24931984	Detecting independent and recurrent copy number aberrations using interval graphs.	Bioinformatics	2014
25355789	Characterization of structural variants with single molecule and hybrid sequencing approaches.	Bioinformatics	2014
24932008	A combinatorial approach for analyzing intra-tumor heterogeneity from high-throughput sequencing data.	Bioinformatics	2014
24072733	MATE-CLEVER: Mendelian-inheritance-aware discovery and genotyping of midsize and long indels.	Bioinformatics	2013
22399677	Mirroring co-evolving trees in the light of their topologies.	Bioinformatics	2012
22553170	From sequence to molecular pathology, and a mechanism driving the neuroendocrine phenotype in prostate cancer.	J Pathol	2012
22294438	Integrated genome and transcriptome sequencing identifies a novel form of hybrid and aggressive prostate cancer.	J Pathol	2012
21131385	Alu repeat discovery and characterization within human genomes.	Genome Res	2011
22048523	Simultaneous structural variation discovery among multiple paired-end sequenced genomes.	Genome Res	2011
21293372	Mapping copy number variation by population-scale genome sequencing.	Nature	2011
21478487	Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data.	Bioinformatics	2011
20385726	Detection and characterization of novel sequence insertions using paired-end next-generation sequencing.	Bioinformatics	2010
20529927	Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery.	Bioinformatics	2010
19415115	smyRNA: a novel Ab initio ncRNA gene finder.	PLoS One	2009
18586721	Biomolecular network motif counting and discovery by color coding.	Bioinformatics	2008
18586730	Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies.	Bioinformatics	2008

1 - 42 of 42

Shantao Li

Yale University

Career Start Year 2015

Number of shared co-authors 9

Ibrahim Numanagi??

University of Victoria

Career Start Year 2012

Number of shared co-authors 6

Jiayin Wang

Xi'an Jiaotong University

Career Start Year 2012

Number of shared co-authors 4

Xiaowei Zhan

Southwestern Medical Center, University of Texas

Career Start Year 2012

Number of shared co-authors 4

Zechen Chong

Heersink School of Medicine, University of Alabama at Birmingham

Career Start Year 2011

Number of shared co-authors 29

Ryan M Layer

Boulder and BioFrontiers Institute, University of Colorado Boulder

Career Start Year 2011

Number of shared co-authors 10

Bernard J Pope

University of Melbourne, The University of Melbourne

Career Start Year 2011

Number of shared co-authors 6

H??ctor Corrada Bravo

University of Maryland College Park, College Park

Career Start Year 2009

Number of shared co-authors 6

Aakrosh Ratan

Center for Public Health Genomics, University of Virginia

Career Start Year 2008

Number of shared co-authors 11

Aaron R Quinlan

University of Utah

Career Start Year 2007

Number of shared co-authors 7

Arif Harmanci

The University of Texas Health Science Center at Houston

Career Start Year 2007

Number of shared co-authors 5

Jeroen de Ridder

Center for Molecular Medicine, University Medical Center Utrecht

Career Start Year 2006

Number of shared co-authors 4

Anne-Katrin Emde

Variant Bio Inc.

Career Start Year 2006

Number of shared co-authors 19

Benedict Paten

UC Santa Cruz Genomics Institute, University of California

Career Start Year 2005

Number of shared co-authors 32

Carl Kingsford

Carnegie Mellon University

Career Start Year 2005

Number of shared co-authors 2

Robert Sebra

Icahn School of Medicine at Mount Sinai

Career Start Year 2004

Number of shared co-authors 35

David E Larson

McDonnell Genome Institute, Washington University School of Medicine

Career Start Year 2003

Number of shared co-authors 12

Lachlan J M Coin

The Peter Doherty Institute for Infection and Immunity, The University of Melbourne

Career Start Year 2003

Number of shared co-authors 3

Niko Beerenwinkel

ETH Zurich

Career Start Year 2002

Number of shared co-authors 7

Brent S Pedersen

Center for Molecular Medicine, University Medical Center Utrecht

Career Start Year 2001

Number of shared co-authors 4

Michael Brudno

University of Toronto

Career Start Year 2000

Number of shared co-authors 12

Quang M Trinh

Ontario Institute for Cancer Research

Career Start Year 1999

Number of shared co-authors 5

Eric Banks

Broad Institute of MIT and Harvard

Career Start Year 1999

Number of shared co-authors 13

Michael C Wendl

Washington University in St Louis

Career Start Year 1998

Number of shared co-authors 18

Vineet Bafna

University of California San Diego

Career Start Year 1998

Number of shared co-authors 13

John V Pearson

QIMR Berghofer Medical Research Institute

Career Start Year 1996

Number of shared co-authors 5

Jean-Pierre A Kocher

Mayo Clinic

Career Start Year 1991

Number of shared co-authors 1

Aleksandar Milosavljevic

Baylor College of Medicine

Career Start Year 1991

Number of shared co-authors 14

Elaine R Mardis

The Ohio State University

Career Start Year 1988

Number of shared co-authors 33

Vincent Ferretti

Ontario Institute for Cancer Research

Career Start Year 1986

Number of shared co-authors 4

row(s) 1 - 30 of 30

Fereydoun Hormozdiari

University of California davis

Co-authored papers 11

Suleyman Cenk Sahinalp

National Cancer Institute, National Institutes of Health

Co-authored papers 11

Olivier Elemento

Meyer Cancer Center

Co-authored papers 10

Dmitry Meleshko

Englander Institute for Precision Medicine, The Meyer Cancer Center

Co-authored papers 8

Can Alkan

Bilkent University

Co-authored papers 7

Camir Ricketts

Institute for Computational Biomedicine, Weill Cornell Medicine of Cornell University

Co-authored papers 6

Christopher E Mason

Feil Family Brain and Mind Research Institute.

Co-authored papers 6

Alexandros Sigaras

Columbia University, United States Bureau of Educational and Cultural Affairs Fulbright Program, University of Piraeus, Weill Cornell Medical College, Weill Cornell Medicine

Co-authored papers 6

Evan E Eichler

University of Washington

Co-authored papers 5

Pegah Khosravi

New York City College of Technology

Co-authored papers 5

Marcin Imielinski

Co-authored papers 5

Faraz Hach

University of British Columbia

Co-authored papers 5