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Author Details

Clarisse Marotz
University of California San Diego
2015
48
24
PMIDPaper TitleJournal TitlePublished Year
37853256Author Correction: Enhancing untargeted metabolomics using metadata-based source annotation.Nat Biotechnol2023
36041454Effects of rumen-native microbial feed supplementation on milk yield, composition, and feed efficiency in lactating dairy cows.J Anim Sci2022
35444197Early microbial markers of periodontal and cardiometabolic diseases in ORIGINS.NPJ Biofilms Microbiomes2022
35411350Wastewater sequencing uncovers early, cryptic SARS-CoV-2 variant transmission.medRxiv2022
35798960Enhancing untargeted metabolomics using metadata-based source annotation.Nat Biotechnol2022
35798029Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission.Nature2022
35574962Nitrite Generating and Depleting Capacity of the Oral Microbiome and Cardiometabolic Risk: Results from ORIGINS.J Am Heart Assoc2022
36472419A Reproducible and Tunable Synthetic Soil Microbial Community Provides New Insights into Microbial Ecology.mSystems2022
32868914Context-aware dimensionality reduction deconvolutes gut microbial community dynamics.Nat Biotechnol2021
35590169Naturalization of the microbiota developmental trajectory of Cesarean-born neonates after vaginal seeding.Med2021
33906915Evaluation of the Effect of Storage Methods on Fecal, Saliva, and Skin Microbiome Composition.mSystems2021
33594005Quantifying Live Microbial Load in Human Saliva Samples over Time Reveals Stable Composition and Dynamic Load.mSystems2021
33512248A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities.Biotechniques2021
33482920Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment.Microbiome2021
33727399EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets.mSystems2021
34410641Host DNA Depletion in Saliva Samples for Improved Shotgun Metagenomics.Methods Mol Biol2021
34726486Analysis of SARS-CoV-2 RNA Persistence across Indoor Surface Materials Reveals Best Practices for Environmental Monitoring Programs.mSystems2021
34508652Emergence of an early SARS-CoV-2 epidemic in the United States.Cell2021
34103074SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment.Microbiome2021
34312621Comparison of heat-inactivated and infectious SARS-CoV-2 across indoor surface materials shows comparable RT-qPCR viral signal intensity and persistence.bioRxiv2021
32391521Visualizing 'omic feature rankings and log-ratios using Qurro.NAR Genom Bioinform2020
32061904Differing salivary microbiome diversity, community and diurnal rhythmicity in association with affective state and peripheral inflammation in adults.Brain Behav Immun2020
33200135A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities.bioRxiv2020
33127739Handwashing and Detergent Treatment Greatly Reduce SARS-CoV-2 Viral Load on Halloween Candy Handled by COVID-19 Patients.mSystems2020
33236030Microbial context predicts SARS-CoV-2 prevalence in patients and the hospital built environment.medRxiv2020
32793921SARS-CoV-2 Screening Among Symptom-Free Healthcare Workers.medRxiv2020
32753656Linking metabolic phenotypes to pathogenic traits among "Candidatus Liberibacter asiaticus" and its hosts.NPJ Syst Biol Appl2020
32839779Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity.bioRxiv2020
32839765Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment.Res Sq2020
30497919Contamination in Low Microbial Biomass Microbiome Studies: Issues and Recommendations.Trends Microbiol2019
31239397redbiom: a Rapid Sample Discovery and Feature Characterization System.mSystems2019
31399723Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.Nat Biotechnol2019
31341288Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.Nat Biotechnol2019
31222023Establishing microbial composition measurement standards with reference frames.Nat Commun2019
31124709Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary.Biotechniques2019
30801021A Novel Sparse Compositional Technique Reveals Microbial Perturbations.mSystems2019
28968189Impacts of the Human Gut Microbiome on Therapeutics.Annu Rev Pharmacol Toxicol2018
30059804Are microbiome studies ready for hypothesis-driven research?Curr Opin Microbiol2018
30030441Antibiotic-induced microbiome depletion alters metabolic homeostasis by affecting gut signaling and colonic metabolism.Nat Commun2018
29795809American Gut: an Open Platform for Citizen Science Microbiome Research.mSystems2018
29482639Improving saliva shotgun metagenomics by chemical host DNA depletion.Microbiome2018
28700459The Microbiome in Posttraumatic Stress Disorder and Trauma-Exposed Controls: An Exploratory Study.Psychosom Med2017
28375652The Microbiome and Human Biology.Annu Rev Genomics Hum Genet2017
28625159DNA extraction for streamlined metagenomics of diverse environmental samples.Biotechniques2017
26855148Divergent clonal evolution of castration-resistant neuroendocrine prostate cancer.Nat Med2016
27698622Treating Obesity and Metabolic Syndrome with Fecal Microbiota Transplantation.Yale J Biol Med2016
27670121Culturing: Looking it up in our gut.Nat Microbiol2016
26374986SPOP mutation leads to genomic instability in prostate cancer.Elife2015
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Collaborators

University of California
Co-authored papers 30
University of California San Diego
Co-authored papers 19
University of California San Diego
Co-authored papers 17
Center for Microbiome Innovation, University of California San Diego
Co-authored papers 14
Center for Microbiome Innovation, University of California San Diego
Co-authored papers 13
University of California
Co-authored papers 11
Center for Microbiome Innovation, University of California San Diego
Co-authored papers 10
University of California San Diego
Co-authored papers 9
Co-authored papers 8
Biodesign Center for Fundamental and Applied Microbiomics, Arizona State University
Co-authored papers 8
University of California San Diego
Co-authored papers 8
University of California San Diego School of Medicine
Co-authored papers 7
University of California
Co-authored papers 6
University of California San Diego
Co-authored papers 6
University of California, USA Institute for Genomic Medicine
Co-authored papers 5
University of California San Diego
Co-authored papers 5
Cumming School of Medicine, University of Calgary
Co-authored papers 5
Co-authored papers 4
Herbert Wertheim School of Public Health, University of California
Co-authored papers 4
Co-authored papers 4
The Scripps Research Institute
Co-authored papers 4
University of California San Diego
Co-authored papers 4
Center for Microbiome Innovation, University of California San Diego
Co-authored papers 4
Co-authored papers 4
Northern Gulf Institute, Mississippi State University
Co-authored papers 4
Scripps Institution of Oceanography, University of California San Diego
Co-authored papers 4
Co-authored papers 3
Karolinska Institutet
Co-authored papers 3
University of Minnesota
Co-authored papers 3
University of California
Co-authored papers 3