Author details

Full Name

Simone Sidoli

Affiliation

ORCID

Career Start Year

2012

Papers

121

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37456851	Tet2 regulates Sin3a recruitment at active enhancers in embryonic stem cells.		2023
35051657	A Dynamic and Combinatorial Histone Code Drives Malaria Parasite Asexual and Sexual Development.	Mol Cell Proteomics	2022
35380877	The transcription factor PAX8 promotes angiogenesis in ovarian cancer through interaction with SOX17.	Sci Signal	2022
35730903	Dense Granule Protein GRA64 Interacts with Host Cell ESCRT Proteins during Infection.	mBio	2022
35044400	Multi-omic profiling of histone variant H3.3 lysine 27 methylation reveals a distinct role from canonical H3 in stem cell differentiation.	Mol Omics	2022
34984976	Type I and II PRMTs inversely regulate post-transcriptional intron detention through Sm and CHTOP methylation.	eLife	2022
34856123	Quantitative subcellular acyl-CoA analysis reveals distinct nuclear metabolism and isoleucine-dependent histone propionylation.	Molecular Cell	2022
35202573	CpG island reconfiguration for the establishment and synchronization of polycomb functions upon exit from naive pluripotency.	Mol Cell	2022
35061542	Enzymatic transfer of acetate on histones from lysine reservoir sites to lysine activating sites.	Sci Adv	2022
34636387	FGF-2 induces a failure of cell cycle progression in cells harboring amplified K-Ras, revealing new insights into oncogene-induced senescence.	Mol Omics	2021
34181637	VAL genes regulate vegetative phase change via miR156-dependent and independent mechanisms.	PLoS Genetics	2021
34077751	Protective neutralizing antibodies from human survivors of Crimean-Congo hemorrhagic fever.	Cell	2021
33833436	Author Correction: Long-term behavioral and cell-type-specific molecular effects of early life stress are mediated by H3K79me2 dynamics in medium spiny neurons.	Nat Neurosci	2021
33833093	QSER1 protects DNA methylation valleys from de novo methylation.	Science	2021
33723435	Long-term behavioral and cell-type-specific molecular effects of early life stress are mediated by H3K79me2 dynamics in medium spiny neurons.	Nat Neurosci	2021
33818074	Combinatorial Histone H3 Modifications Are Dynamically Altered in Distinct Cell Cycle Phases.	J Am Soc Mass Spectrom	2021
33594971	One-shot analysis of translated mammalian lncRNAs with AHARIBO.	Elife	2021
33299182	H1 histones control the epigenetic landscape by local chromatin compaction.	Nature	2021
33285300	White adipose remodeling during browning in mice involves YBX1 to drive thermogenic commitment.	Mol Metab	2021
34505004	Independent transcriptomic and proteomic regulation by type I and II protein arginine methyltransferases.	iScience	2021
34660696	A Key Silencing Histone Mark on Chromatin Is Lost When Colorectal Adenocarcinoma Cells Are Depleted of Methionine by Methionine Î³-Lyase.	Front Mol Biosci	2021
34428304	The Polycomb protein RING1B enables estrogen-mediated gene expression by promoting enhancer-promoter interaction and R-loop formation.	Nucleic Acids Res	2021
34538324	High throughput and low bias DNA methylation and hydroxymethylation analysis by direct injection mass spectrometry.	Anal Chim Acta	2021
35004218	DNA methylation and hydroxymethylation analysis using a high throughput and low bias direct injection mass spectrometry platform.	MethodsX	2021
32604817	Mass Spectrometry to Study Chromatin Compaction.	Biology	2020
32376827	Disruption of ATRX-RNA interactions uncovers roles in ATRX localization and PRC2 function.	Nat Commun	2020
32139906	Lysine 4 of histone H3.3 is required for embryonic stem cell differentiation, histone enrichment at regulatory regions and transcription accuracy.	Nat Genet	2020
32070774	Bullet points to evaluate the performance of the middle-down proteomics workflow for histone modification analysis.	Methods	2020
32311217	Comprehensive Map of the Artemisia annua Proteome and Quantification of Differential Protein Expression in Chemotypes Producing High versus Low Content of Artemisinin.	Proteomics	2020
33659415	A Workflow for Ultra-rapid Analysis of Histone Post-translational Modifications with Direct-injection Mass Spectrometry.	Bio Protoc	2020
32823483	Phosphoproteomic Analysis of Rat Neutrophils Shows the Effect of Intestinal Ischemia/Reperfusion and Preconditioning on Kinases and Phosphatases.	Int J Mol Sci	2020
32989324	An integrated multi-omics approach identifies epigenetic alterations associated with Alzheimer's disease.	Nat Genet	2020
33370417	Toxoplasma gondii PPM3C, a secreted protein phosphatase, affects parasitophorous vacuole effector export.	PLoS Pathogens	2020
33033384	Author Correction: An integrated multi-omics approach identifies epigenetic alterations associated with Alzheimer's disease.	Nat Genet	2020
32641411	Mutant FOXL2<sup>C134W</sup> Hijacks SMAD4 and SMAD2/3 to Drive Adult Granulosa Cell Tumors.	Cancer Res	2020
32747411	PR-DUB maintains the expression of critical genes through FOXK1/2- and ASXL1/2/3-dependent recruitment to chromatin and H2AK119ub1 deubiquitination.	Genome Res	2020
32968743	Guide for protein fold change and p-value calculation for non-experts in proteomics.	Molecular Omics	2020
32804637	nuclear RNAi factor SET-32 deposits the transgenerational histone modification, H3K23me3.	eLife	2020
31194517	Single Cell Proteomics by Data-Independent Acquisition To Study Embryonic Asymmetry in <i>Xenopus laevis</i>.	Anal Chem	2019
31727681	Deep profiling and custom databases improve detection of proteoforms generated by alternative splicing.	Genome Res	2019
31624313	Histone H3K23-specific acetylation by MORF is coupled to H3K14 acylation.	Nat Commun	2019
30606806	H3K9me3-heterochromatin loss at protein-coding genes enables developmental lineage specification.	Science	2019
30565761	Impaired cocaine-induced behavioral plasticity in the male offspring of cocaine-experienced sires.	Eur J Neurosci	2019
30626590	Acetyl-CoA Metabolism Supports Multistep Pancreatic Tumorigenesis.	Cancer Discov	2019
31541121	A mass spectrometry-based assay using metabolic labeling to rapidly monitor chromatin accessibility of modified histone proteins.	Sci Rep	2019
30980322	Isotopic Labeling and Quantitative Proteomics of Acetylation on Histones and Beyond.	Methods Mol Biol	2019
30872405	Regulation of proline-directed kinases and the trans-histone code H3K9me3/H4K20me3 during human myogenesis.	J Biol Chem	2019
30970245	Interrogating Histone Acetylation and BRD4 as Mitotic Bookmarks of Transcription.	Cell Rep	2019
31123082	One minute analysis of 200 histone posttranslational modifications by direct injection mass spectrometry.	Genome Res	2019
30736855	Coordination between TGF-Î² cellular signaling and epigenetic regulation during epithelial to mesenchymal transition.	Epigenetics Chromatin	2019