Author details

Full Name

Hamilton O Smith

Affiliation

J. Craig Venter Institute

ORCID

Career Start Year

1964

Papers

149

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
35063075	Fundamental behaviors emerge from simulations of a living minimal cell.	Cell	2022
32993167	Gross Chromosomal Rearrangements in <i>Kluyveromyces marxianus</i> Revealed by Illumina and Oxford Nanopore Sequencing.	Int J Mol Sci	2020
30657448	Essential metabolism for a minimal cell.	Elife	2019
31850364	Kinetic Modeling of the Genetic Information Processes in a Minimal Cell.	Front Mol Biosci	2019
31262838	Polar Effects of Transposon Insertion into a Minimal Bacterial Genome.	J Bacteriol	2019
29786424	Tuning Gene Activity by Inducible and Targeted Regulation of Gene Expression in Minimal Bacterial Cells.	ACS Synth Biol	2018
28348033	Minimal Cells-Real and Imagined.	Cold Spring Harb Perspect Biol	2017
27013737	Design and synthesis of a minimal bacterial genome.	Science	2016
27489041	One step engineering of the small-subunit ribosomal RNA using CRISPR/Cas9.	Sci Rep	2016
25603181	Designed surface residue substitutions in [NiFe] hydrogenase that improve electron transfer characteristics.	Int J Mol Sci	2015
26185218	The Sequence of the Human Genome.	Clin Chem	2015
25897682	Designer diatom episomes delivered by bacterial conjugation.	Nat Commun	2015
25654978	Bacterial genome reduction using the progressive clustering of deletions via yeast sexual cycling.	Genome Res	2015
24603933	Transferring whole genomes from bacteria to yeast spheroplasts using entire bacterial cells to reduce DNA shearing.	Nat Protoc	2014
25101070	Rescue of mutant fitness defects using in vitro reconstituted designer transposons in Mycoplasma mycoides.	Front Microbiol	2014
24934472	A broad survey reveals substitution tolerance of residues ligating FeS clusters in [NiFe] hydrogenase.	BMC Biochem	2014
23542886	Direct transfer of whole genomes from bacteria to yeast.	Nat Methods	2013
24325901	Assembly of eukaryotic algal chromosomes in yeast.	J Biol Eng	2013
23819621	Dual organism design cycle reveals small subunit substitutions that improve [NiFe] hydrogenase hydrogen evolution.	J Biol Eng	2013
22941652	Sequence analysis of a complete 1.66 Mb Prochlorococcus marinus MED4 genome cloned in yeast.	Nucleic Acids Res	2012
23651249	Assembly of large, high G+C bacterial DNA fragments in yeast.	ACS Synth Biol	2012
23651007	Cloning the Acholeplasma laidlawii PG-8A genome in Saccharomyces cerevisiae as a yeast centromeric plasmid.	ACS Synth Biol	2012
21257809	[NiFe] hydrogenase from Alteromonas macleodii with unusual stability in the presence of oxygen and high temperature.	Appl Environ Microbiol	2011
21637846	Heterologous expression of Alteromonas macleodii and Thiocapsa roseopersicina [NiFe] hydrogenases in Synechococcus elongatus.	PLoS One	2011
21718346	Genetic analysis of the Alteromonas macleodii [NiFe]-hydrogenase.	FEMS Microbiol Lett	2011
21349975	Heterologous expression of Alteromonas macleodii and Thiocapsa roseopersicina [NiFe] hydrogenases in Escherichia coli.	Microbiology (Reading)	2011
21107654	Single-step linker-based combinatorial assembly of promoter and gene cassettes for pathway engineering.	Biotechnol Lett	2011
20211840	Cloning whole bacterial genomes in yeast.	Nucleic Acids Res	2010
20935651	Chemical synthesis of the mouse mitochondrial genome.	Nat Methods	2010
20488990	Creation of a bacterial cell controlled by a chemically synthesized genome.	Science	2010
19363495	Enzymatic assembly of DNA molecules up to several hundred kilobases.	Nat Methods	2009
19953084	A systems biology tour de force for a near-minimal bacterium.	Mol Syst Biol	2009
19841849	The evolution of RecD outside of the RecBCD complex.	J Mol Evol	2009
19633107	Discovery of [NiFe] hydrogenase genes in metagenomic DNA: cloning and heterologous expression in Thiocapsa roseopersicina.	Appl Environ Microbiol	2009
19696314	Creating bacterial strains from genomes that have been cloned and engineered in yeast.	Science	2009
18218864	Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome.	Science	2008
19073939	One-step assembly in yeast of 25 overlapping DNA fragments to form a complete synthetic Mycoplasma genitalium genome.	Proc Natl Acad Sci U S A	2008
17355176	The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific.	PLoS Biol	2007
17600181	Genome transplantation in bacteria: changing one species to another.	Science	2007
16407165	Essential genes of a minimal bacterium.	Proc Natl Acad Sci U S A	2006
16286637	Cell-free cloning using phi29 DNA polymerase.	Proc Natl Acad Sci U S A	2005
15001713	Environmental genome shotgun sequencing of the Sargasso Sea.	Science	2004
14657399	Generating a synthetic genome by whole genome assembly: phiX174 bacteriophage from synthetic oligonucleotides.	Proc Natl Acad Sci U S A	2003
16576752	The independence of our genome assemblies.	Proc Natl Acad Sci U S A	2003
11904395	On the sequencing and assembly of the human genome.	Proc Natl Acad Sci U S A	2002
12368868	Sequence of Plasmodium falciparum chromosomes 2, 10, 11 and 14.	Nature	2002
12368865	Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii.	Nature	2002
12368813	Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis.	Nat Biotechnol	2002
12364791	The genome sequence of the malaria mosquito Anopheles gambiae.	Science	2002
12040188	A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome.	Science	2002

1 - 50 of 149

Peter R Weigele

New England Biolabs Inc.

Career Start Year 1998

Number of shared co-authors 5

Sandra W Clifton

Garvan Institute of Medical Research

Career Start Year 1994

Number of shared co-authors 49

Istv??n Nagy

Institute of Biochemistry, HUN-REN Biological Research Centre

Career Start Year 1991

Number of shared co-authors 1

Arcady Mushegian

National Science Foundation

Career Start Year 1991

Number of shared co-authors 11

Arun Malhotra

University of Miami Miller School of Medicine

Career Start Year 1986

Number of shared co-authors 0

Roger S Lasken

J. Craig Venter Institute

Career Start Year 1984

Number of shared co-authors 13

Hirotada Mori

Nara Institute of Science and Technology

Career Start Year 1984

Number of shared co-authors 1

Bruce W Birren

Broad Institute of MIT and Harvard

Career Start Year 1983

Number of shared co-authors 68

Susan T Lovett

Brandeis University

Career Start Year 1983

Number of shared co-authors 0

Paul A Kitts

National Center for Biotechnology Information, National Institutes of Health

Career Start Year 1982

Number of shared co-authors 31

Steven A Benner

Foundation for Applied Molecular Evolution

Career Start Year 1980

Number of shared co-authors 2

Deborah A Siegele

Texas A&M University, College Station

Career Start Year 1979

Number of shared co-authors 7

Kalappa Muniyappa

Indian Institute of Science

Career Start Year 1979

Number of shared co-authors 0

Malcolm E Winkler

Indiana University Bloomington

Career Start Year 1978

Number of shared co-authors 1

Jef D Boeke

Institute for Systems Genetics, NYU School of Medicine

Career Start Year 1978

Number of shared co-authors 4

Gregory A Buck

Virginia Commonwealth University.

Career Start Year 1978

Number of shared co-authors 1

Gail E Christie

Virginia Commonwealth University

Career Start Year 1977

Number of shared co-authors 0

Ivan Ivanov

Institute of Molecular Biology "Roumen Tsanev",Bulgarian Academy of Sciences

Career Start Year 1974

Number of shared co-authors 0

Thomas R Gingeras

Stanley Institute for Cognitive Genomics

Career Start Year 1974

Number of shared co-authors 28

Mark Achtman

Warwick Medical School, University of Warwick

Career Start Year 1971

Number of shared co-authors 1

Antoine Danchin

University of Hong Kong

Career Start Year 1969

Number of shared co-authors 13

David Botstein

Calico Life Sciences LLC

Career Start Year 1968

Number of shared co-authors 17

Ronald W Davis

Stanford University

Career Start Year 1968

Number of shared co-authors 50

Carol A Gross

University of California san francisco

Career Start Year 1968

Number of shared co-authors 0

Bart Barrell

Wellcome Trust Sanger Institute

Career Start Year 1965

Number of shared co-authors 45

Richard W Hyman

Stanford University Medical College

Career Start Year 1965

Number of shared co-authors 27

Jeffrey Tze-Fei Wong

The Hong Kong University of Science and Technology

Career Start Year 1961

Number of shared co-authors 5

Glauco P Tocchini-Valentini

Monterotondo Mouse Clinic (MMC), Italian National Research Council (CNR)

Career Start Year 1961

Number of shared co-authors 3

Masayori Inouye

Robert Wood Johnson Medical School, Rutgers University

Career Start Year 1961

Number of shared co-authors 0

David Schlessinger

NIH/National Institute of Ageing

Career Start Year 1960

Number of shared co-authors 14

row(s) 1 - 30 of 30

J C Venter

The J. Craig Venter Institute

Co-authored papers 55

Claire M Fraser

Institute for Genome Sciences, University of Maryland School of Medicine

Co-authored papers 18

Mark D Adams

Case Western Reserve University School of Medicine

Co-authored papers 18

Owen White

Institute for Genome Sciences, University of Maryland School of Medicine

Co-authored papers 17

Steven L Salzberg

Center for Computational Biology, Johns Hopkins University

Co-authored papers 15

Jeremy Peterson

The Institute for Genomic Research, 9712 Medical Center Drive

Co-authored papers 13

Granger G Sutton

J. Craig Venter Institute

Co-authored papers 13

Cynthia Andrews-Pfannkoch

Mayo Clinic

Co-authored papers 12

Michelle Giglio

University of Maryland School of Medicine, Institute for Genome Sciences

Co-authored papers 12

Robert J Dodson

Northwestern University Biomedical Informatics Center and Center for Genetic Medicine

Co-authored papers 10

Karen A Ketchum

Yale University School of Medicine

Co-authored papers 9

Karen E Nelson

J. Craig Venter Institute, 9605 Medical Center Drive

Co-authored papers 9

Jonathan A Eisen

McLean Hospital

Co-authored papers 8

Stephen L Hoffman

Inc., 9800 Medical Center Drive

Co-authored papers 8

Malcolm J Gardner

J. Craig Venter Institute

Co-authored papers 8

Jeannine D Gocayne

National Institute of Neurological and Communicative Disorders and Stroke

Co-authored papers 7

William C Nelson

Pacific Northwest National Laboratory

Co-authored papers 7

Daniel J Carucci

US Military Malaria Vaccine Program, Naval Medical Research Center

Co-authored papers 7

Leda M Cummings

Institute for Genome Research

Co-authored papers 7

Delwood Richardson

Co-authored papers 7

Karin A Remington

The J. Craig Venter Institute.

Co-authored papers 6

Eugene W Myers

Max Planck Institute of Molecular Cell Biology and Genetics

Co-authored papers 6

Daniel H Haft

National Center for Biotechnology Information, National Institutes of Health

Co-authored papers 6

Zhongwu Lai

Oncology R&D

Co-authored papers 5

Aaron L Halpern

Illumina Inc.

Co-authored papers 5

Shibu Yooseph

University of Central Florida

Co-authored papers 5

Yu-Hui Rogers

Johns Hopkins Bayview Research Campus

Co-authored papers 5

Douglas B Rusch

Center for Genomics and Bioinformatics, Indiana University

Co-authored papers 5

Anna Glodek

Institute of Psychology, Jagiellonian University

Co-authored papers 5

Anthony R Kerlavage

National Cancer Institute

Co-authored papers 5

1 - 30

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