Author details

Full Name

Dimitri Gilis

Affiliation

ORCID

Career Start Year

1996

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
34788392	NPTX1 mutations trigger endoplasmic reticulum stress and cause autosomal dominant cerebellar ataxia.	Brain	2022
29251560	Rational antibiotic design: in silico structural comparison of the functional cavities of penicillin-binding proteins and Ã¿-lactamases.	Journal of Biomolecular Structure and Dynamics	2019
30380546	Cross-Reactivity between Major IgE Epitopes of Family 5 Allergens from Dermatophagoides pteronyssinus and Blomia tropicalis.	International Archives of Allergy and Immunology	2019
30230051	The house dust mite allergen Der p 5 binds lipid ligands and stimulates airway epithelial cells through a TLR2-dependent pathway.	Clinical and Experimental Allergy	2019
29525130	The Hidden Face of Rubisco.	Trends in Plant Science	2018
30430936	Immunodominant IgE Epitopes of Der p 5 Allergen.	Protein and Peptide Letters	2018
26573727	Stability strengths and weaknesses in protein structures detected by statistical potentials: Application to bovine seminal ribonuclease.	Proteins: Structure, Function and Bioinformatics	2016
27109604	Single Mutations in the Transmembrane Domains of Maize Plasma Membrane Aquaporins Affect the Activity of Monomers within a Heterotetramer.	Molecular Plant	2016
27018864	The minor house dust mite allergen Der p 13 is a fatty acid-binding protein and an activator of a TLR2-mediated innate immune response.	Allergy: European Journal of Allergy and Clinical Immunology	2016
23723246	BeAtMuSiC: Prediction of changes in protein-protein binding affinity on mutations.	Nucleic Acids Research	2013
23843247	Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions.	Proteins	2013
22208271	Modelling and bioinformatics analysis of the dimeric structure of house dust mite allergens from families 5 and 21: Der f 5 could dimerize as Der p 5.	Journal of Biomolecular Structure and Dynamics	2012
22506965	A conserved cysteine residue is involved in disulfide bond formation between plant plasma membrane aquaporin monomers.	Biochemical Journal	2012
21780213	Flanking domain stability modulates the aggregation kinetics of a polyglutamine disease protein.	Protein Science	2011
21569468	PoPMuSiC 2.1: a web server for the estimation of protein stability changes upon mutation and sequence optimality.	BMC Bioinformatics	2011
20573782	Evidence that interaction between conserved residues in transmembrane helices 2, 3, and 7 are crucial for human VPAC1 receptor activation.	Molecular Pharmacology	2010
19761777	The first peptides: the evolutionary transition between prebiotic amino acids and early proteins.	Journal of Theoretical Biology	2009
19654118	Fast and accurate predictions of protein stability changes upon mutations using statistical potentials and neural networks: PoPMuSiC-2.0.		2009
18518943	SODa: an Mn/Fe superoxide dismutase prediction and design server.	BMC Bioinformatics	2008
17912757	Mn/Fe superoxide dismutase interaction fingerprints and prediction of oligomerization and metal cofactor from sequence.	Proteins: Structure, Function and Bioinformatics	2008
17905838	Enhancing the stability and solubility of TEV protease using in silico design.	Protein Science	2007
16711770	In silico analysis of the thermodynamic stability changes of psychrophilic and mesophilic alpha-amylases upon exhaustive single-site mutations.	Journal of Chemical Information and Modeling	2006
16563020	Development of novel statistical potentials describing cation-pi interactions in proteins and comparison with semiempirical and quantum chemistry approaches.	Journal of Chemical Information and Modeling	2006
16533849	A new generation of statistical potentials for proteins.	Biophysical Journal	2006
15106995	Protein decoy sets for evaluating energy functions.	Journal of Biomolecular Structure and Dynamics	2004
15240455	Database-derived potentials dependent on protein size for in silico folding and design.	Biophysical Journal	2004
12860140	Sequence-structure signals of 3D domain swapping in proteins.	Journal of Molecular Biology	2003
12498804	In vitro and in silico design of alpha1-antitrypsin mutants with different conformational stabilities.	Journal of Molecular Biology	2003
12437370	What is paradoxical about Levinthal paradox?	Journal of Biomolecular Structure and Dynamics	2002
12490462	PoPMuSiC, rationally designing point mutations in protein structures.	Bioinformatics	2002
11119640	Identification and ab initio simulations of early folding units in proteins.	Proteins: Structure, Function and Bioinformatics	2001
11737948	Optimality of the genetic code with respect to protein stability and amino-acid frequencies.		2001
11239084	PoPMuSiC, an algorithm for predicting protein mutant stability changes: application to prion proteins.		2000
9652406	Different derivations of knowledge-based potentials and analysis of their robustness and context-dependent predictive power.		1998
9299354	Predicting protein stability changes upon mutation using database-derived potentials: solvent accessibility determines the importance of local versus non-local interactions along the sequence.	Journal of Molecular Biology	1997
8632471	Stability changes upon mutation of solvent-accessible residues in proteins evaluated by database-derived potentials.	Journal of Molecular Biology	1996