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Author Details

Andreas Beyer
University of Cologne
1991
102
36
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37076734Insufficient evidence for non-neutrality of synonymous mutations.Nature2023
38001379Age-associated transcriptional stress due to accelerated elongation and increased stalling of RNAPII.Nat Genet2023
37783816In planta expression of human polyQ-expanded huntingtin fragment reveals mechanisms to prevent disease-related protein aggregation.Nat Aging2023
37932288Probabilities of developing HIV-1 bNAb sequence features in uninfected and chronically infected individuals.Nat Commun2023
37384530Dietary restriction mitigates the age-associated decline in mouse B cell receptor repertoire diversity.Cell Rep2023
37046086Ageing-associated changes in transcriptional elongation influence longevity.Nature2023
35259281Biological mechanisms of aging predict age-related disease co-occurrence in patients.Aging Cell2022
35574625The impact of genomic variation on protein phosphorylation states and regulatory networks.Mol Syst Biol2022
36266547HypoMap-a unified single-cell gene expression atlas of the murine hypothalamus.Nat Metab2022
36224378Global, in situ analysis of the structural proteome in individuals with Parkinson's disease to identify a new class of biomarker.Nat Struct Mol Biol2022
35241478NMD is required for timely cell fate transitions by fine-tuning gene expression and regulating translation.Genes Dev2022
35176023Regulatory network-based imputation of dropouts in single-cell RNA sequencing data.PLoS Comput Biol2022
33357446Dynamic 3D proteomes reveal protein functional alterations at high resolution in situ.Cell2021
33687089Cooperative genetic networks drive embryonic stem cell transition from naïve to formative pluripotency.EMBO J2021
33792684Corrigendum to: A coevolved EDS1-SAG101-NRG1 module mediates cell death signaling by TIR-domain immune receptors.Plant Cell2021
33879316Tissue-specific modulation of gene expression in response to lowered insulin signalling in <i>Drosophila</i>.Elife2021
33932331Deciphering the signaling network of breast cancer improves drug sensitivity prediction.Cell Syst2021
34762640Optimizing network propagation for multi-omics data integration.PLoS Comput Biol2021
34155196Genomic imprinting in mouse blastocysts is predominantly associated with H3K27me3.Nat Commun2021
32319721Pyruvate kinase variant of fission yeast tunes carbon metabolism, cell regulation, growth and stress resistance.Mol Syst Biol2020
33304478The proteomic landscape of small urinary extracellular vesicles during kidney transplantation.J Extracell Vesicles2020
33317623Convergent network effects along the axis of gene expression during prostate cancer progression.Genome Biol2020
32111728The Integrated RNA Landscape of Renal Preconditioning against Ischemia-Reperfusion Injury.J Am Soc Nephrol2020
30522767The proteome microenvironment determines the protective effect of preconditioning in cisplatin-induced acute kidney injury.Kidney Int2019
31742247A nutritional memory effect counteracts benefits of dietary restriction in old mice.Nat Metab2019
31175306Comparative analysis of mRNA and protein degradation in prostate tissues indicates high stability of proteins.Nat Commun2019
31521608Proteomics-Based Monitoring of Pathway Activity Reveals that Blocking Diacylglycerol Biosynthesis Rescues from Alpha-Synuclein Toxicity.Cell Syst2019
28968690regNet: an R package for network-based propagation of gene expression alterations.Bioinformatics2018
30090875Multi-region proteome analysis quantifies spatial heterogeneity of prostate tissue biomarkers.Life Sci Alliance2018
30462643Hepatic gene body hypermethylation is a shared epigenetic signature of murine longevity.PLoS Genet2018
29530281Single-nephron proteomes connect morphology and function in proteinuric kidney disease.Kidney Int2018
28916541A proteomic atlas of insulin signalling reveals tissue-specific mechanisms of longevity assurance.Mol Syst Biol2017
28415695Detection of COPB2 as a KRAS synthetic lethal partner through integration of functional genomics screens.Oncotarget2017
28351387Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism.Genome Biol2017
29254951Landscape of nuclear transport receptor cargo specificity.Mol Syst Biol2017
29089484Systematic proteome and proteostasis profiling in human Trisomy 21 fibroblast cells.Nat Commun2017
27104977On the Dependency of Cellular Protein Levels on mRNA Abundance.Cell2016
26549429Testing and Validation of Computational Methods for Mass Spectrometry.J Proteome Res2016
27716417Importance of rare gene copy number alterations for personalized tumor characterization and survival analysis.Genome Biol2016
27189540The Footprint of Polygenic Adaptation on Stress-Responsive Cis-Regulatory Divergence in the Arabidopsis Genus.Mol Biol Evol2016
25362887Pathway and time-resolved benzo[a]pyrene toxicity on Hepa1c1c7 cells at toxic and subtoxic exposure.J Proteome Res2015
26638078The African Turquoise Killifish Genome Provides Insights into Evolution and Genetic Architecture of Lifespan.Cell2015
26109276A random forest approach to capture genetic effects in the presence of population structure.Nat Commun2015
25598502Associations between DNA methylation and schizophrenia-related intermediate phenotypes - a gene set enrichment analysis.Prog Neuropsychopharmacol Biol Psychiatry2015
24901223Coiled-coil proteins facilitated the functional expansion of the centrosome.PLoS Comput Biol2014
25432776Natural genetic variation impacts expression levels of coding, non-coding, and antisense transcripts in fission yeast.Mol Syst Biol2014
25375358Stage-specific binding profiles of cohesin in resting and activated B lymphocytes suggest a role for cohesin in immunoglobulin class switching and maturation.PLoS One2014
25188415Revealing molecular mechanisms by integrating high-dimensional functional screens with protein interaction data.PLoS Comput Biol2014
23334424A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis.Nature2013
24278002Assessing computational methods for transcription factor target gene identification based on ChIP-seq data.PLoS Comput Biol2013
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Collaborators

Thomas Wilhelm
Institute of Biochemistry and Molecular Immunology, RWTH Aachen University
Co-authored papers 11
Ruedi Aebersold
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 8
Jens Hollunder
Flanders Institute for Biotechnology, Ghent University
Co-authored papers 6
J??rg B??hler
University College London
Co-authored papers 6
Paola Picotti
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 6
Christopher T Workman
Technical University of Denmark
Co-authored papers 4
Alexander Schmidt
Co-authored papers 4
Trey Ideker (CM4AI)
University of California San Diego
Co-authored papers 4
Vera Pancaldi
Universite de Toulouse, Inserm, CNRS, Universite Toulouse III-Paul Sabatier
Co-authored papers 3
Saskia Trump
Berlin Institute of Health at Charite - Universitatsmedizin Berlin
Co-authored papers 3
Matthias Mann
Max-Planck Institute of Biochemistry
Co-authored papers 3
Peter J Wild
Co-authored papers 3
Tiannan Guo
Westlake University
Co-authored papers 3
Markus M Rinschen
Co-authored papers 3
Niels J Rupp
Co-authored papers 3
Julio Saez-Rodriguez
Institute of Computational Biomedicine, Heidelberg University
Co-authored papers 3
Ulrich Wagner
Co-authored papers 3
Yansheng Liu
Yale University School of Medicine
Co-authored papers 3
Ludovic Gillet
ETH Zurich
Co-authored papers 2
Anthony A Hyman
Max Planck Institute of Molecular Cell Biology and Genetics
Co-authored papers 2
Marija Buljan
Sestre milosrdnice University Hospital Centre
Co-authored papers 2
Michael J O Wakelam
Co-authored papers 2
Wolf Reik
The Babraham Institute
Co-authored papers 2
Stefan Kalkhof
Institute for Bioanalysis, Coburg University of Applied Sciences and Arts
Co-authored papers 2
Wenguang Shao
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 2
Giuliano Ciarimboli
University Hospital Munster
Co-authored papers 2
Lukas Reiter
Co-authored papers 2
Carlos D Bustamante
Stanford University
Co-authored papers 1
Silpa Suthram
Stanford Center for Biomedical Informatics Research, Stanford University
Co-authored papers 1
Michael R Hoopmann
Institute for Systems Biology
Co-authored papers 1
Release 1.2