Author details

Full Name

Serghei Mangul

Affiliation

School of Pharmacy, University of Southern California

ORCID

Career Start Year

2011

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36999049	RNA-seq data science: From raw data to effective interpretation.	Front Genet	2023
37761360	The Genomic Landscape of Colorectal Cancer in the Saudi Arabian Population Using a Comprehensive Genomic Panel.	Diagnostics (Basel)	2023
37824736	Response to 'comment on rigorous benchmarking of T cell receptor repertoire profiling methods for cancer RNA sequencing' by Davydov A.N.; Bolotin D.A.; Poslavsky S. V. and Chudakov D.M.	Brief Bioinform	2023
37693502	Whole Blood Transcriptomics Identifies Subclasses of Pediatric Septic Shock.	Res Sq	2023
37609176	Analytical code sharing practices in biomedical research.	bioRxiv	2023
37198712	Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability.	Genome Biol	2023
36999049	RNA-seq data science: From raw data to effective interpretation.	Front Genet	2023
37291798	Rigorous benchmarking of T-cell receptor repertoire profiling methods for cancer RNA sequencing.	Brief Bioinform	2023
37693502	Whole Blood Transcriptomics Identifies Subclasses of Pediatric Septic Shock.	Res Sq	2023
37609176	Analytical code sharing practices in biomedical research.	bioRxiv	2023
37824736	Response to 'comment on rigorous benchmarking of T cell receptor repertoire profiling methods for cancer RNA sequencing' by Davydov A.N.; Bolotin D.A.; Poslavsky S. V. and Chudakov D.M.	Brief Bioinform	2023
37761360	The Genomic Landscape of Colorectal Cancer in the Saudi Arabian Population Using a Comprehensive Genomic Panel.	Diagnostics (Basel)	2023
37291798	Rigorous benchmarking of T-cell receptor repertoire profiling methods for cancer RNA sequencing.	Brief Bioinform	2023
37198712	Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability.	Genome Biol	2023
34966181	Virtual meetings promise to eliminate geographical and administrative barriers and increase accessibility, diversity and inclusivity.	Nat Biotechnol	2022
35396471	Unlocking capacities of genomics for the COVID-19 response and future pandemics.	Nat Methods	2022
36085557	The Pioneer Advantage: Filling the blank spots on the map of genome diversity in Europe.	Gigascience	2022
35753701	A comprehensive benchmarking of WGS-based deletion structural variant callers.	Brief Bioinform	2022
36327219	Exome-wide association study to identify rare variants influencing COVID-19 outcomes: Results from the Host Genetics Initiative.	PLoS Genet	2022
36548425	Remote opportunities for scholars in Ukraine.	Science	2022
36852763	TAMPA: interpretable analysis and visualization of metagenomics-based taxon abundance profiles.	Gigascience	2022
37496156	Scientists without borders: lessons from Ukraine.	Gigascience	2022
34966181	Virtual meetings promise to eliminate geographical and administrative barriers and increase accessibility, diversity and inclusivity.	Nat Biotechnol	2022
35076276	Correction for Rando et al., "Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure".	mSystems	2022
37496156	Scientists without borders: lessons from Ukraine.	Gigascience	2022
35396471	Unlocking capacities of genomics for the COVID-19 response and future pandemics.	Nat Methods	2022
35753701	A comprehensive benchmarking of WGS-based deletion structural variant callers.	Brief Bioinform	2022
36548425	Remote opportunities for scholars in Ukraine.	Science	2022
36852763	TAMPA: interpretable analysis and visualization of metagenomics-based taxon abundance profiles.	Gigascience	2022
36327219	Exome-wide association study to identify rare variants influencing COVID-19 outcomes: Results from the Host Genetics Initiative.	PLoS Genet	2022
36085557	The Pioneer Advantage: Filling the blank spots on the map of genome diversity in Europe.	Gigascience	2022
35076276	Correction for Rando et al., "Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure".	mSystems	2022
33948451	Unlocking capacities of viral genomics for the COVID-19 pandemic response.	ArXiv	2021
33858487	Improving the completeness of public metadata accompanying omics studies.	Genome Biol	2021
34002093	Diversity in immunogenomics: the value and the challenge.	Nat Methods	2021
33948451	Unlocking capacities of viral genomics for the COVID-19 pandemic response.	ArXiv	2021
34214168	Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction.	Nucleic Acids Res	2021
34043590	Rare loss-of-function variants in type I IFN immunity genes are not associated with severe COVID-19.	J Clin Invest	2021
34036652	Detection of viral gene expression in risk-stratified biopsies reveals no active HPV in cutaneous squamous cell carcinoma.	Exp Dermatol	2021
34346485	Systematic evaluation of transcriptomics-based deconvolution methods and references using thousands of clinical samples.	Brief Bioinform	2021
34446078	Technology dictates algorithms: recent developments in read alignment.	Genome Biol	2021
34644550	Ancestral diversity is limited in published T cell receptor sequencing studies.	Immunity	2021
33858487	Improving the completeness of public metadata accompanying omics studies.	Genome Biol	2021
34644550	Ancestral diversity is limited in published T cell receptor sequencing studies.	Immunity	2021
34446078	Technology dictates algorithms: recent developments in read alignment.	Genome Biol	2021
34043590	Rare loss-of-function variants in type I IFN immunity genes are not associated with severe COVID-19.	J Clin Invest	2021
34346485	Systematic evaluation of transcriptomics-based deconvolution methods and references using thousands of clinical samples.	Brief Bioinform	2021
34214168	Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction.	Nucleic Acids Res	2021
34036652	Detection of viral gene expression in risk-stratified biopsies reveals no active HPV in cutaneous squamous cell carcinoma.	Exp Dermatol	2021
34002093	Diversity in immunogenomics: the value and the challenge.	Nat Methods	2021

1 - 50 of 118

Melissa L Smith

University of Louisville

Career Start Year 2016

Number of shared co-authors 11

Marc Dabad

Universitat de Barcelona (UB)

Career Start Year 2013

Number of shared co-authors 5

Xiaowei Zhan

Southwestern Medical Center, University of Texas

Career Start Year 2012

Number of shared co-authors 3

Jeremy Goecks

Oregon Health & Science University

Career Start Year 2010

Number of shared co-authors 0

Marta Gut

Universitat de Barcelona (UB)

Career Start Year 2010

Number of shared co-authors 15

H??ctor Corrada Bravo

University of Maryland College Park, College Park

Career Start Year 2009

Number of shared co-authors 3

Abhinav Nellore

Oregon Health & Science University

Career Start Year 2008

Number of shared co-authors 1

Aakrosh Ratan

Center for Public Health Genomics, University of Virginia

Career Start Year 2008

Number of shared co-authors 3

Philip Ewels

Stockholm University

Career Start Year 2008

Number of shared co-authors 2

Juan Caballero

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 2008

Number of shared co-authors 2

Srikar Chamala

USC/Children's Hospital Los Angeles Los Angeles California USA.

Career Start Year 2007

Number of shared co-authors 0

Raoul J P Bonnal

National Institute for Molecular Genetics "Romeo ed Enrica Invernizzi"

Career Start Year 2006

Number of shared co-authors 0

Joshua W K Ho

The University of Hong Kong

Career Start Year 2006

Number of shared co-authors 0

Brandi L Cantarel

University of Texas Southwestern Medical Center

Career Start Year 2006

Number of shared co-authors 1

Simon Anders

Heidelberg University

Career Start Year 2006

Number of shared co-authors 3

Michael C Schatz

Johns Hopkins University

Career Start Year 2004

Number of shared co-authors 7

James Taylor

Johns Hopkins University

Career Start Year 2004

Number of shared co-authors 5

Lachlan J M Coin

The Peter Doherty Institute for Infection and Immunity, The University of Melbourne

Career Start Year 2003

Number of shared co-authors 13

Ali Bashir

Google Accelerated Science Team, Google Inc

Career Start Year 2003

Number of shared co-authors 11

Scott J Emrich

The Pennsylvania State University College of Medicine

Career Start Year 2002

Number of shared co-authors 1

Timo Lassmann

Telethon Kids Institute, University of Western Australia

Career Start Year 2002

Number of shared co-authors 3

Pjotr Prins

Wageningen University & Research

Career Start Year 2001

Number of shared co-authors 1

Vineet Bafna

University of California San Diego

Career Start Year 1998

Number of shared co-authors 8

Anton Nekrutenko

The Pennsylvania State University, University Park

Career Start Year 1998

Number of shared co-authors 8

Robert A Holt

BC Cancer Research Institute

Career Start Year 1996

Number of shared co-authors 7

Bonnie Berger

Massachusetts Institute of Technology

Career Start Year 1994

Number of shared co-authors 7

Steven L Salzberg

Center for Computational Biology, Johns Hopkins University

Career Start Year 1992

Number of shared co-authors 3

Jean-Pierre A Kocher

Mayo Clinic

Career Start Year 1991

Number of shared co-authors 0

Aleksandar Milosavljevic

Baylor College of Medicine

Career Start Year 1991

Number of shared co-authors 6

Vincent Ferretti

Ontario Institute for Cancer Research

Career Start Year 1986

Number of shared co-authors 4

row(s) 1 - 30 of 30

Eleazar Eskin

Co-authored papers 21

Malak Abedalthagafi

Emory School of Medicine

Co-authored papers 9

David Koslicki

and the Huck Institutes of the Life Sciences, Penn State University, University Park

Co-authored papers 7

Sergey Knyazev

David Geffen School of Medicine, University of California los angeles

Co-authored papers 7

Roberto Spreafico

Co-authored papers 4

Matteo Pellegrini

Co-authored papers 4

Brian B Nadel

Co-authored papers 4

Nicole A Nogoy

BGI Hong Kong Tech Co Ltd.

Co-authored papers 3

Ren Sun

University of California los angeles

Co-authored papers 3

Casey S Greene

Dartmouth College Geisel School of Medicine, Princeton University, University of Colorado Anschutz Medical Campus, University of Pennsylvania Perelman School of Medicine

Co-authored papers 3

Noah Zaitlen

Co-authored papers 3

Maura Rossetti

University of California Los Angeles

Co-authored papers 3

Lana X Garmire

University of Michigan ann arbor

Co-authored papers 2

Krzysztof Kiryluk

Columbia University

Co-authored papers 2