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Author Details

Daniel H Haft
National Center for Biotechnology Information, National Institutes of Health
1985
102
68
PMIDPaper TitleJournal TitlePublished Year
37962425RefSeq and the prokaryotic genome annotation pipeline in the age of metagenomes.Nucleic Acids Res2024
38084967<i>In silico</i> discovery of the myxosortases that process MYXO-CTERM and three novel prokaryotic C-terminal protein-sorting signals that share invariant Cys residues.J Bacteriol2024
37962425RefSeq and the prokaryotic genome annotation pipeline in the age of metagenomes.Nucleic Acids Res2024
38084967<i>In silico</i> discovery of the myxosortases that process MYXO-CTERM and three novel prokaryotic C-terminal protein-sorting signals that share invariant Cys residues.J Bacteriol2024
36350672InterPro in 2022.Nucleic Acids Res2023
36350672InterPro in 2022.Nucleic Acids Res2023
36598231Eight Unexpected Selenoprotein Families in Organometallic Biochemistry in Clostridium difficile, in ABC Transport, and in Methylmercury Biosynthesis.J Bacteriol2023
36598231Eight Unexpected Selenoprotein Families in Organometallic Biochemistry in Clostridium difficile, in ABC Transport, and in Methylmercury Biosynthesis.J Bacteriol2023
36699409Folding the unfoldable: using AlphaFold to explore spurious proteins.Bioinform Adv2022
35380458Consensus on β-Lactamase Nomenclature.Antimicrob Agents Chemother2022
35675101Curation of the AMRFinderPlus databases: applications, functionality and impact.Microb Genom2022
36699409Folding the unfoldable: using AlphaFold to explore spurious proteins.Bioinform Adv2022
35380458Consensus on β-Lactamase Nomenclature.Antimicrob Agents Chemother2022
35675101Curation of the AMRFinderPlus databases: applications, functionality and impact.Microb Genom2022
33156333The InterPro protein families and domains database: 20 years on.Nucleic Acids Res2021
34135355AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence.Sci Rep2021
33156333The InterPro protein families and domains database: 20 years on.Nucleic Acids Res2021
33270901RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation.Nucleic Acids Res2021
34135355AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence.Sci Rep2021
33270901RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation.Nucleic Acids Res2021
32209564Erratum for Feldgarden et al., "Validating the AMRFinder Tool and Resistance Gene Database by Using Antimicrobial Resistance Genotype-Phenotype Correlations in a Collection of Isolates".Antimicrob Agents Chemother2020
31857715Evolutionary classification of CRISPR-Cas systems: a burst of class 2 and derived variants.Nat Rev Microbiol2020
31712217A Standard Numbering Scheme for Class C β-Lactamases.Antimicrob Agents Chemother2020
32209564Erratum for Feldgarden et al., "Validating the AMRFinder Tool and Resistance Gene Database by Using Antimicrobial Resistance Genotype-Phenotype Correlations in a Collection of Isolates".Antimicrob Agents Chemother2020
31857715Evolutionary classification of CRISPR-Cas systems: a burst of class 2 and derived variants.Nat Rev Microbiol2020
31712217A Standard Numbering Scheme for Class C β-Lactamases.Antimicrob Agents Chemother2020
31427293Validating the AMRFinder Tool and Resistance Gene Database by Using Antimicrobial Resistance Genotype-Phenotype Correlations in a Collection of Isolates.Antimicrob Agents Chemother2019
31427293Validating the AMRFinder Tool and Resistance Gene Database by Using Antimicrobial Resistance Genotype-Phenotype Correlations in a Collection of Isolates.Antimicrob Agents Chemother2019
29112715RefSeq: an update on prokaryotic genome annotation and curation.Nucleic Acids Res2018
30053115Proposal for assignment of allele numbers for mobile colistin resistance (mcr) genes.J Antimicrob Chemother2018
29473278Both widespread PEP-CTERM proteins and exopolysaccharides are required for floc formation of Zoogloea resiniphila and other activated sludge bacteria.Environ Microbiol2018
29112715RefSeq: an update on prokaryotic genome annotation and curation.Nucleic Acids Res2018
30053115Proposal for assignment of allele numbers for mobile colistin resistance (mcr) genes.J Antimicrob Chemother2018
29473278Both widespread PEP-CTERM proteins and exopolysaccharides are required for floc formation of Zoogloea resiniphila and other activated sludge bacteria.Environ Microbiol2018
28120876Mycofactocin-associated mycobacterial dehydrogenases with non-exchangeable NAD cofactors.Sci Rep2017
28182651A comprehensive software suite for protein family construction and functional site prediction.PLoS One2017
28120876Mycofactocin-associated mycobacterial dehydrogenases with non-exchangeable NAD cofactors.Sci Rep2017
28182651A comprehensive software suite for protein family construction and functional site prediction.PLoS One2017
26890609What Makes a Bacterial Species Pathogenic?:Comparative Genomic Analysis of the Genus Leptospira.PLoS Negl Trop Dis2016
26890609What Makes a Bacterial Species Pathogenic?:Comparative Genomic Analysis of the Genus Leptospira.PLoS Negl Trop Dis2016
27261266Comment on: Resistance gene naming and numbering: is it a new gene or not?J Antimicrob Chemother2016
26553804Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation.Nucleic Acids Res2016
26553804Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation.Nucleic Acids Res2016
27261266Comment on: Resistance gene naming and numbering: is it a new gene or not?J Antimicrob Chemother2016
25428371The InterPro protein families database: the classification resource after 15 years.Nucleic Acids Res2015
25617609Using comparative genomics to drive new discoveries in microbiology.Curr Opin Microbiol2015
25428371The InterPro protein families database: the classification resource after 15 years.Nucleic Acids Res2015
26712937Permuting the PGF Signature Motif Blocks both Archaeosortase-Dependent C-Terminal Cleavage and Prenyl Lipid Attachment for the Haloferax volcanii S-Layer Glycoprotein.J Bacteriol2015
26045538Erratum for "New Insights into Dissemination and Variation of the Health Care-Associated Pathogen Acinetobacter baumannii from Genomic Analysis".mBio2015
26411297An updated evolutionary classification of CRISPR-Cas systems.Nat Rev Microbiol2015
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Collaborators

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Co-authored papers 27
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Co-authored papers 23
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Co-authored papers 23
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Co-authored papers 22
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Co-authored papers 19
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Co-authored papers 19
University of Maryland School of Medicine, Institute for Genome Sciences
Co-authored papers 18
McLean Hospital
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The Institute for Genomic Research, 9712 Medical Center Drive
Co-authored papers 15
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 14
The J. Craig Venter Institute
Co-authored papers 10
Co-authored papers 10
Center for Computational Biology, Johns Hopkins University
Co-authored papers 10
Co-authored papers 9
Co-authored papers 9
University of Wurzburg
Co-authored papers 9
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Medical Research Council Laboratory of Molecular Biology
Co-authored papers 7
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Georgetown University Medical Center
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European Bioinformatics Institute (EMBL-EBI)
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University of Southern California
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Personal Genome Diagnostics Inc.
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University of Geneva
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European Bioinformatics Institute
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University of Cape Town
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