Author details

Full Name

Ron Stewart

Affiliation

ORCID

Career Start Year

2007

Papers

106

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37449574	Effects of an In Vivo Vaping Challenge on In Vitro Interleukin-6 Biosynthesis Pathways in Arterial Endothelial Cells Derived From Human Embryonic Stem Cells.		2023
36436489	A Nile rat transcriptomic landscape across 22 organs by ultra-deep sequencing and comparative RNA-seq pipeline (CRSP).		2023
37915001	Serial KinderMiner (SKiM) discovers and annotates biomedical knowledge using co-occurrence and transformer models.	BMC Bioinformatics	2023
37563287	Transcriptomic clock predicts vascular changes of prodromal diabetic retinopathy.		2023
36638788	Generation of anti-GD2 CAR macrophages from human pluripotent stem cells for cancer immunotherapies.		2023
35139376	Network inference with Granger causality ensembles on single-cell transcriptomics.	Cell Reports	2022
35705328	Dynamic regulatory module networks for inference of cell type-specific transcriptional networks.	Genome Res	2022
36344967	A haplotype-resolved genome assembly of the Nile rat facilitates exploration of the genetic basis of diabetes.	BMC Biol	2022
36590683	SpatialCorr identifies gene sets with spatially varying correlation structure.	Cell Rep Methods	2022
36493752	Fibroblast inflammatory priming determines regenerative versus fibrotic skin repair in reindeer.		2022
35278615	Rapid changes in chromatin structure during dedifferentiation of primary hepatocytes in vitro.	Genomics	2022
34850101	Enhancing biological signals and detection rates in single-cell RNA-seq experiments with cDNA library equalization.	Nucleic Acids Res	2022
33096026	Large-Scale Multi-omic Analysis of COVID-19 Severity.	Cell Syst	2021
33622236	CHARTS: a web application for characterizing and comparing tumor subpopulations in publicly available single-cell RNA-seq data sets.	BMC Bioinformatics	2021
33772223	Artificial intelligence-assisted phenotype discovery of fragile X syndrome in a population-based sample.	Genet Med	2021
33647016	Interspecies chimeric conditions affect the developmental rate of human pluripotent stem cells.	PLoS Comput Biol	2021
32743614	Large-scale Multi-omic Analysis of COVID-19 Severity.	medRxiv	2020
32123905	TimeMeter assesses temporal gene expression similarity and identifies differentially progressing genes.	Nucleic Acids Research	2020
31583627	Automated Extraction and Visualization of Protein-Protein Interaction Networks and Beyond: A Text-Mining Protocol.	Methods Mol Biol	2020
34345838	Co-culture with mouse embryonic fibroblasts improves maintenance of metabolic function of human small hepatocyte progenitor cells.	Current Research in Toxicology	2020
31461642	An InÂ Vitro Human Segmentation Clock Model Derived from Embryonic Stem Cells.	Cell Rep	2019
31815944	Automated minute scale RNA-seq of pluripotent stem cell differentiation reveals early divergence of human and mouse gene expression kinetics.	PLoS Comput Biol	2019
30547447	A Machine-Learning-Based Drug Repurposing Approach Using Baseline Regularization.	Methods Mol Biol	2019
31302154	Inferring Regulatory Programs Governing Region Specificity of Neuroepithelial Stem Cells during Early Hindbrain and Spinal Cord Development.		2019
30760602	Pluripotent stem cell-derived myogenic progenitors remodel their molecular signature upon in vivo engraftment.	Proceedings of the National Academy of Sciences of the United States of America	2019
31457090	Data-driven phenotype discovery of <i>FMR1</i> premutation carriers in a population-based sample.	Sci Adv	2019
30807574	Time-dependent Pax3-mediated chromatin remodeling and cooperation with Six4 and Tead2 specify the skeletal myogenic lineage in developing mesoderm.	PLoS Biol	2019
30854483	AP-1/miR-200a regulate the pro-regenerative glial cell response during axolotl spinal cord regeneration.	Communications Biology	2019
31259012	Machine Learning Assisted Discovery of Novel Predictive Lab Tests Using Electronic Health Record Data.	AMIA Jt Summits Transl Sci Proc	2019
29230913	A Novel Approach to Single Cell RNA-Sequence Analysis Facilitates In Silico Gene Reporting of Human Pluripotent Stem Cell-Derived Retinal Cell Types.	Stem Cells	2018
30326833	Trendy: segmented regression analysis of expression dynamics in high-throughput ordered profiling experiments.	BMC Bioinformatics	2018
29678445	Spatial patterns of gene expression are unveiled in the chick primitive streak by ordering single-cell transcriptomes.	Dev Biol	2018
28179190	Species-specific developmental timing is maintained by pluripotent stem cells ex utero.	Dev Biol	2017
28599598	Uniform neural tissue models produced on synthetic hydrogels using standard culture techniques.	Experimental Biology and Medicine	2017
28343999	A Genome-wide Analysis of Human Pluripotent Stem Cell-Derived Endothelial Cells in 2D or 3D Culture.	Stem Cell Reports	2017
28903495	RNA-Seq of Human Neural Progenitor Cells Exposed to Lead (Pb) Reveals Transcriptome Dynamics, Splicing Alterations and Disease Risk Associations.	Toxicological Sciences	2017
28815126	A Simple Text Mining Approach for Ranking Pairwise Associations in Biomedical Applications.		2017
28418000	SCnorm: robust normalization of single-cell RNA-seq data.	Nat Methods	2017
28658631	PAX7 Targets, CD54, Integrin Î±9Î²1, and SDC2, Allow Isolation of Human ESC/iPSC-Derived Myogenic Progenitors.	Cell Reports	2017
28696312	Functional characterization of human pluripotent stem cell-derived arterial endothelial cells.	Proceedings of the National Academy of Sciences of the United States of America	2017
27475628	Analysis of embryonic development in the unsequenced axolotl: Waves of transcriptomic upheaval and stability.	Developmental Biology	2017
27534536	Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm.	Genome Biol	2016
28392671	Baseline Regularization for Computational Drug Repositioning with Longitudinal Observational Data.	IJCAI (U S)	2016
28316874	Computational Drug Repositioning Using Continuous Self-Controlled Case Series.	KDD	2016
27153613	Quality control of single-cell RNA-seq by SinQC.		2016
26743507	OEFinder: a user interface to identify and visualize ordering effects in single-cell RNA-seq data.	Bioinformatics	2016
26877223	Lineage Reprogramming of Fibroblasts into Proliferative Induced Cardiac Progenitor Cells by Defined Factors.	Cell Stem Cell	2016
26945632	Stable engineered vascular networks from human induced pluripotent stem cell-derived endothelial cells cultured in synthetic hydrogels.		2016
26771351	Development of Bipotent Cardiac/Skeletal Myogenic Progenitors from MESP1+ Mesoderm.	Stem Cell Reports	2016
26546512	A predictive modeling approach for cell line-specific long-range regulatory interactions.	Nucleic Acids Res	2016