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Author Details

Quaid Morris
Sloan Kettering Institute
2003
138
57
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36774364A deep learning approach reveals unexplored landscape of viral expression in cancer.Nat Commun2023
36774364A deep learning approach reveals unexplored landscape of viral expression in cancer.Nat Commun2023
37002329RNA-binding proteins that lack canonical RNA-binding domains are rarely sequence-specific.Sci Rep2023
37002329RNA-binding proteins that lack canonical RNA-binding domains are rarely sequence-specific.Sci Rep2023
35019858Multiomic Profiling of Central Nervous System Leukemia Identifies mRNA Translation as a Therapeutic Target.Blood Cancer Discov2022
36047844PAN-cODE: COVID-19 forecasting using conditional latent ODEs.J Am Med Inform Assoc2022
36018788PRIESSTESS: interpretable, high-performing models of the sequence and structure preferences of RNA-binding proteins.Nucleic Acids Res2022
35870114Prognostic impact of autoimmune disease in oral cavity squamous cell carcinoma.J Surg Oncol2022
36129821Reconstructing cancer phylogenies using Pairtree, a clone tree reconstruction algorithm.STAR Protoc2022
35476669The X-linked splicing regulator MBNL3 has been co-opted to restrict placental growth in eutherians.PLoS Biol2022
35857801Activating mTOR Mutations Are Detrimental in Nutrient-Poor Conditions.Cancer Res2022
36482170Author Correction: Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSig.Nat Commun2022
36481665Author Correction: A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns.Nat Commun2022
35247876Reconstructing Complex Cancer Evolutionary Histories from Multiple Bulk DNA Samples Using Pairtree.Blood Cancer Discov2022
35019858Multiomic Profiling of Central Nervous System Leukemia Identifies mRNA Translation as a Therapeutic Target.Blood Cancer Discov2022
35476669The X-linked splicing regulator MBNL3 has been co-opted to restrict placental growth in eutherians.PLoS Biol2022
35857801Activating mTOR Mutations Are Detrimental in Nutrient-Poor Conditions.Cancer Res2022
36482170Author Correction: Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSig.Nat Commun2022
36481665Author Correction: A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns.Nat Commun2022
35870114Prognostic impact of autoimmune disease in oral cavity squamous cell carcinoma.J Surg Oncol2022
36129821Reconstructing cancer phylogenies using Pairtree, a clone tree reconstruction algorithm.STAR Protoc2022
36018788PRIESSTESS: interpretable, high-performing models of the sequence and structure preferences of RNA-binding proteins.Nucleic Acids Res2022
36047844PAN-cODE: COVID-19 forecasting using conditional latent ODEs.J Am Med Inform Assoc2022
35247876Reconstructing Complex Cancer Evolutionary Histories from Multiple Bulk DNA Samples Using Pairtree.Blood Cancer Discov2022
33417860Colorectal Cancer Cells Enter a Diapause-like DTP State to Survive Chemotherapy.Cell2021
33475006The promise of machine learning to inform the management of juvenile idiopathic arthritis.Expert Rev Clin Immunol2021
33465079Reconstructing tumor evolutionary histories and clone trees in polynomial-time with SubMARine.PLoS Comput Biol2021
33436550Differential contribution of transcriptomic regulatory layers in the definition of neuronal identity.Nat Commun2021
33417860Colorectal Cancer Cells Enter a Diapause-like DTP State to Survive Chemotherapy.Cell2021
33398189A practical guide to cancer subclonal reconstruction from DNA sequencing.Nat Methods2021
34521033Peripheral blood values as predictors of autoimmune status in oral cavity squamous cell carcinoma.Transl Oncol2021
34389724Interacting evolutionary pressures drive mutation dynamics and health outcomes in aging blood.Nat Commun2021
34521033Peripheral blood values as predictors of autoimmune status in oral cavity squamous cell carcinoma.Transl Oncol2021
34389724Interacting evolutionary pressures drive mutation dynamics and health outcomes in aging blood.Nat Commun2021
33465079Reconstructing tumor evolutionary histories and clone trees in polynomial-time with SubMARine.PLoS Comput Biol2021
33436550Differential contribution of transcriptomic regulatory layers in the definition of neuronal identity.Nat Commun2021
33398189A practical guide to cancer subclonal reconstruction from DNA sequencing.Nat Methods2021
33475006The promise of machine learning to inform the management of juvenile idiopathic arthritis.Expert Rev Clin Immunol2021
32160542The RNA-Binding Protein Rasputin/G3BP Enhances the Stability and Translation of Its Target mRNAs.Cell Rep2020
32024849A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns.Nat Commun2020
31797603Genome Gerrymandering: optimal division of the genome into regions with cancer type specific differences in mutation rates.Pac Symp Biocomput2020
31797600TrackSigFreq: subclonal reconstructions based on mutation signatures and allele frequencies.Pac Symp Biocomput2020
31797592Identifying Transitional High Cost Users from Unstructured Patient Profiles Written by Primary Care Physicians.Pac Symp Biocomput2020
32064787Systematic genetics and single-cell imaging reveal widespread morphological pleiotropy and cell-to-cell variability.Mol Syst Biol2020
32160542The RNA-Binding Protein Rasputin/G3BP Enhances the Stability and Translation of Its Target mRNAs.Cell Rep2020
32086311Relapse-Fated Latent Diagnosis Subclones in Acute B Lineage Leukemia Are Drug Tolerant and Possess Distinct Metabolic Programs.Cancer Discov2020
32762776The RNA-binding protein SERBP1 functions as a novel oncogenic factor in glioblastoma by bridging cancer metabolism and epigenetic regulation.Genome Biol2020
33288765Quantifying the influence of mutation detection on tumour subclonal reconstruction.Nat Commun2020
32086311Relapse-Fated Latent Diagnosis Subclones in Acute B Lineage Leukemia Are Drug Tolerant and Possess Distinct Metabolic Programs.Cancer Discov2020
32024849A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns.Nat Commun2020
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Collaborators

Timothy R Hughes
University of Toronto
Co-authored papers 49
Debashish Ray
Co-authored papers 18
Benjamin J Blencowe
University of Toronto
Co-authored papers 18
Brendan J Frey
University of Toronto
Co-authored papers 17
Gary D Bader
University of Toronto
Co-authored papers 12
Sara Mostafavi
University of British Columbia and BC Children's Hospital
Co-authored papers 10
Jeff Wintersinger
University of Toronto
Co-authored papers 9
Wen Zhang
Nanjing Agricultural University
Co-authored papers 9
Amit G Deshwar
University of Toronto
Co-authored papers 9
Gerald Quon
University of California davis
Co-authored papers 8
Anna Goldenberg
SickKids Research Institute
Co-authored papers 6
Jason Montojo
University of Toronto
Co-authored papers 6
Jack F Greenblatt
College Street, University of Toronto
Co-authored papers 6
Paul C Boutros
University of California los angeles
Co-authored papers 6
Shankar Vembu
Donnelly Center for Cellular and Biomolecular Research, Ontario University of Toronto
Co-authored papers 6
Charles Boone
University of Toronto
Co-authored papers 5
Gordon Chua
University of Calgary
Co-authored papers 5
Mark D Robinson
University of Zurich
Co-authored papers 5
Qun Pan
University of Toronto
Co-authored papers 5
Brenda J Andrews
University of Toronto
Co-authored papers 5
Tomas Babak
Queen's University
Co-authored papers 5
John E Dick
Princess Margaret Cancer Centre, University Health Network
Co-authored papers 4
Christian Lopes
University of Toronto
Co-authored papers 4
Lincoln Stein
Ontario Institute for Cancer Research, University Avenue
Co-authored papers 4
Sanie Mnaimneh
University of Toronto
Co-authored papers 4
Steven E Brenner
University of California berkeley
Co-authored papers 4
Matthew T Weirauch
University of Cincinnati College of Medicine
Co-authored papers 4
Naveed Mohammad
Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital
Co-authored papers 4
J??rg Grigull
York University
Co-authored papers 3
Oliver Stegle
Wellcome Sanger Institute
Co-authored papers 3
Release 1.2