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Author Details

Steven J M Jones
University of British Columbia
1995
464
108
PMIDPaper TitleJournal TitlePublished Year
36335502Phasing DNA Methylation.Methods Mol Biol2023
36373660CIViCdb 2022: evolution of an open-access cancer variant interpretation knowledgebase.Nucleic Acids Res2023
36335502Phasing DNA Methylation.Methods Mol Biol2023
37558751Chemokine expression predicts T cell-inflammation and improved survival with checkpoint inhibition across solid cancers.NPJ Precis Oncol2023
37551834A high-throughput pipeline for DNA/RNA/small RNA purification from tissue samples for sequencing.Biotechniques2023
37095257The DACH1 gene is frequently deleted in prostate cancer, restrains prostatic intraepithelial neoplasia, decreases DNA damage repair, and predicts therapy responses.Oncogene2023
36964191Homologous recombination deficiency signatures in gastrointestinal and thoracic cancers correlate with platinum therapy duration.NPJ Precis Oncol2023
36759939Population-size history inferences from the coho salmon (Oncorhynchus kisutch) genome.G3 (Bethesda)2023
36635327NCBP2 and TFRC are novel prognostic biomarkers in oral squamous cell carcinoma.Cancer Gene Ther2023
37455852The genome sequence of the Loggerhead sea turtle, <i>Caretta caretta</i> Linnaeus 1758.F1000Res2023
37186014Mitogen-induced defective mitosis transforms neural progenitor cells.Neuro Oncol2023
37244935macroH2A2 antagonizes epigenetic programs of stemness in glioblastoma.Nat Commun2023
36797466Defining the heterogeneity of unbalanced structural variation underlying breast cancer susceptibility by nanopore genome sequencing.Eur J Hum Genet2023
36982943Immune Activation following Irbesartan Treatment in a Colorectal Cancer Patient: A Case Study.Int J Mol Sci2023
36914848A generalizable machine learning framework for classifying DNA repair defects using ctDNA exomes.NPJ Precis Oncol2023
37558751Chemokine expression predicts T cell-inflammation and improved survival with checkpoint inhibition across solid cancers.NPJ Precis Oncol2023
37551834A high-throughput pipeline for DNA/RNA/small RNA purification from tissue samples for sequencing.Biotechniques2023
37455852The genome sequence of the Loggerhead sea turtle, <i>Caretta caretta</i> Linnaeus 1758.F1000Res2023
37186014Mitogen-induced defective mitosis transforms neural progenitor cells.Neuro Oncol2023
36982943Immune Activation following Irbesartan Treatment in a Colorectal Cancer Patient: A Case Study.Int J Mol Sci2023
37244935macroH2A2 antagonizes epigenetic programs of stemness in glioblastoma.Nat Commun2023
37095257The DACH1 gene is frequently deleted in prostate cancer, restrains prostatic intraepithelial neoplasia, decreases DNA damage repair, and predicts therapy responses.Oncogene2023
36964191Homologous recombination deficiency signatures in gastrointestinal and thoracic cancers correlate with platinum therapy duration.NPJ Precis Oncol2023
36914848A generalizable machine learning framework for classifying DNA repair defects using ctDNA exomes.NPJ Precis Oncol2023
36635327NCBP2 and TFRC are novel prognostic biomarkers in oral squamous cell carcinoma.Cancer Gene Ther2023
36797466Defining the heterogeneity of unbalanced structural variation underlying breast cancer susceptibility by nanopore genome sequencing.Eur J Hum Genet2023
36759939Population-size history inferences from the coho salmon (Oncorhynchus kisutch) genome.G3 (Bethesda)2023
36373660CIViCdb 2022: evolution of an open-access cancer variant interpretation knowledgebase.Nucleic Acids Res2023
34687784Optimization of magnetic bead-based nucleic acid extraction for SARS-CoV-2 testing using readily available reagents.J Virol Methods2022
35691590Whole-genome and transcriptome analysis enhances precision cancer treatment options.Ann Oncol2022
36209277Integrative analysis of KRAS wildtype metastatic pancreatic ductal adenocarcinoma reveals mutation and expression-based similarities to cholangiocarcinoma.Nat Commun2022
35624339A community approach to the cancer-variant-interpretation bottleneck.Nat Cancer2022
36071521TMBur: a distributable tumor mutation burden approach for whole genome sequencing.BMC Med Genomics2022
35483882Whole-genome and transcriptome analysis of advanced adrenocortical cancer highlights multiple alterations affecting epigenome and DNA repair pathways.Cold Spring Harb Mol Case Stud2022
36134028A p53 transcriptional signature in primary and metastatic cancers derived using machine learning.Front Genet2022
36131014Failure of human rhombic lip differentiation underlies medulloblastoma formation.Nature2022
36065012Deep learning-based histotype diagnosis of ovarian carcinoma whole-slide pathology images.Mod Pathol2022
35789009Spruce giga-genomes: structurally similar yet distinctive with differentially expanding gene families and rapidly evolving genes.Plant J2022
35787786Genome-wide detection of imprinted differentially methylated regions using nanopore sequencing.Elife2022
35726793Exceptional response to combination ipilimumab and nivolumab in metastatic uveal melanoma: Insights from genomic analysis.Melanoma Res2022
35723286Automated Library Construction and Analysis for High-Throughput Nanopore Sequencing of SARS-CoV-2.J Appl Lab Med2022
36446943Author Correction: Failure of human rhombic lip differentiation underlies medulloblastoma formation.Nature2022
36777186Parent-of-origin detection and chromosome-scale haplotyping using long-read DNA methylation sequencing and Strand-seq.Cell Genom2022
34687784Optimization of magnetic bead-based nucleic acid extraction for SARS-CoV-2 testing using readily available reagents.J Virol Methods2022
35042800The Earth BioGenome Project 2020: Starting the clock.Proc Natl Acad Sci U S A2022
35257510The impact of whole genome and transcriptome analysis (WGTA) on predictive biomarker discovery and diagnostic accuracy of advanced malignancies.J Pathol Clin Res2022
34907396Retraction Note: Tumor necrosis factor overcomes immune evasion in p53-mutant medulloblastoma.Nat Neurosci2022
34843087Early-stage economic analysis of research-based comprehensive genomic sequencing for advanced cancer care.J Community Genet2022
35171977The genome of the forest insect pest Pissodes strobi reveals genome expansion and evidence of a Wolbachia endosymbiont.G3 (Bethesda)2022
34825470An infant with congenital respiratory insufficiency and diaphragmatic paralysis: A novel BICD2 phenotype?Am J Med Genet A2022
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Collaborators

Marco A Marra
University of British Columbia
Co-authored papers 254
Richard A Moore
Co-authored papers 110
Andrew J Mungall
Co-authored papers 103
Yongjun Zhao
Canada British Columbia Cancer Research Centre, University of British Columbia
Co-authored papers 80
Martin Hirst
University of British Columbia
Co-authored papers 64
Robert A Holt
BC Cancer Research Institute
Co-authored papers 61
Janessa Laskin
Co-authored papers 61
Jacqueline E Schein
Canada British Columbia Cancer Research Centre, University of British Columbia
Co-authored papers 55
Yussanne Ma
Co-authored papers 48
Amy G Robertson
Present address: Dxige Research Inc.
Co-authored papers 38
Obi L Griffith
Washington University
Co-authored papers 32
Nina Thiessen
Co-authored papers 32
Martin R Jones
BC Cancer Research Centre.
Co-authored papers 31
Ryan D Morin
Simon Fraser University
Co-authored papers 30
Yaron S Butterfield
Brain Tumour Foundation of Canada
Co-authored papers 28
Martin Krzywinski
BC Cancer Research Center
Co-authored papers 27
Eric Chuah
Co-authored papers 26
Angela Tam
Co-authored papers 24
Shaun D Jackman
University of British Columbia
Co-authored papers 22
Katayoon Kasaian
Ontario Institute for Cancer Research
Co-authored papers 21
David G Huntsman
University of British Columbia
Co-authored papers 20
Kasmintan A Schrader
University of British Columbia
Co-authored papers 19
Malachi Griffith
Washington University
Co-authored papers 18
Michael D Taylor
The Hospital for Sick Children
Co-authored papers 18
Anca Sorana Morrissy
Cumming School of Medicine, University of Calgary
Co-authored papers 18
Ian Bosdet
University of British Columbia
Co-authored papers 17
Caralyn Reisle
University of British Columbia
Co-authored papers 16
Steve E Kalloger
University of British Columbia
Co-authored papers 15
Adrian Ally
Co-authored papers 14
Sohrab P Shah
Memorial Sloan Kettering Cancer Center
Co-authored papers 14
Release 1.2