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Author Details

Aaron L Halpern
Illumina Inc.
1995
48
40
PMIDPaper TitleJournal TitlePublished Year
35134542CYP2C8, CYP2C9, and CYP2C19 Characterization Using Next-Generation Sequencing and Haplotype Analysis: A GeT-RM Collaborative Project.J Mol Diagn2022
30013048Strelka2: fast and accurate calling of germline and somatic variants.Nat Methods2018
27903644A reference data set of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree.Genome Res2017
28650462Haplotype phasing of whole human genomes using bead-based barcode partitioning in a single tube.Nat Biotechnol2017
22175250Computational techniques for human genome resequencing using mated gapped reads.J Comput Biol2012
22785314Accurate whole-genome sequencing and haplotyping from 10 to 20 human cells.Nature2012
22170421Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage.ISME J2012
21437252Stalking the fourth domain in metagenomic data: searching for, discovering, and interpreting novel, deep branches in marker gene phylogenetic trees.PLoS One2011
19892942Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays.Science2010
20733077Characterization of Prochlorococcus clades from iron-depleted oceanic regions.Proc Natl Acad Sci U S A2010
20520651Functional genomic signatures of sponge bacteria reveal unique and shared features of symbiosis.ISME J2010
18213365The Sorcerer II Global Ocean Sampling Expedition: metagenomic characterization of viruses within aquatic microbial samples.PLoS One2008
18676820An MCMC algorithm for haplotype assembly from whole-genome sequence data.Genome Res2008
18637951It's all relative: ranking the diversity of aquatic bacterial communities.Environ Microbiol2008
18321888Consensus generation and variant detection by Celera Assembler.Bioinformatics2008
17431167Evolutionary and biomedical insights from the rhesus macaque genome.Science2007
17994087Evolution of genes and genomes on the Drosophila phylogeny.Nature2007
17892324Nanoliter reactors improve multiple displacement amplification of genomes from single cells.PLoS Genet2007
17803354The diploid genome sequence of an individual human.PLoS Biol2007
17355176The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific.PLoS Biol2007
17355171The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families.PLoS Biol2007
17407382Survey sequencing and comparative analysis of the elephant shark (Callorhinchus milii) genome.PLoS Biol2007
16840556A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes.Proc Natl Acad Sci U S A2006
17185593Ancient noncoding elements conserved in the human genome.Science2006
14769938Whole-genome shotgun assembly and comparison of human genome assemblies.Proc Natl Acad Sci U S A2004
15496912Shotgun sequence assembly and recent segmental duplications within the human genome.Nature2004
15001713Environmental genome shotgun sequencing of the Sargasso Sea.Science2004
12610531Massive parallelism, randomness and genomic advances.Nat Genet2003
14512627The dog genome: survey sequencing and comparative analysis.Science2003
12040188A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome.Science2002
12364791The genome sequence of the malaria mosquito Anopheles gambiae.Science2002
12364792Comparative genome and proteome analysis of Anopheles gambiae and Drosophila melanogaster.Science2002
12169559Efficiently detecting polymorphisms during the fragment assembly process.Bioinformatics2002
12537574Heterochromatic sequences in a Drosophila whole-genome shotgun assembly.Genome Biol2002
12537568Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence.Genome Biol2002
11181995The sequence of the human genome.Science2001
11473002Design of a compartmentalized shotgun assembler for the human genome.Bioinformatics2001
10731133A whole-genome assembly of Drosophila.Science2000
10985235Multiple-changepoint testing for an alternating segments model of a binary sequence.Biometrics2000
11091147Comparison of papillomavirus and immunodeficiency virus evolutionary patterns in the context of a papillomavirus vaccine.J Clin Virol2000
10666718Weighted neighbor joining: a likelihood-based approach to distance-based phylogeny reconstruction.Mol Biol Evol2000
10779483Large-scale comparison of fungal sequence information: mechanisms of innovation in Neurospora crassa and gene loss in Saccharomyces cerevisiae.Genome Res2000
10331281Topological bias and inconsistency of maximum likelihood using wrong models.Mol Biol Evol1999
11315046Minimally selected p and other tests for a single abrupt changepoint in a binary sequence.Biometrics1999
9656490Evolutionary distances for protein-coding sequences: modeling site-specific residue frequencies.Mol Biol Evol1998
7494284Human papillomavirus type 16 variant lineages in United States populations characterized by nucleotide sequence analysis of the E6, L2, and L1 coding segments.J Virol1995
7707535Analysis of genomic sequences of 95 papillomavirus types: uniting typing, phylogeny, and taxonomy.J Virol1995
8573400A computer program designed to screen rapidly for HIV type 1 intersubtype recombinant sequences.AIDS Res Hum Retroviruses1995
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Collaborators

The J. Craig Venter Institute
Co-authored papers 22
The J. Craig Venter Institute.
Co-authored papers 14
Center for Genomics and Bioinformatics, Indiana University
Co-authored papers 12
J. Craig Venter Institute
Co-authored papers 11
Max Planck Institute of Molecular Cell Biology and Genetics
Co-authored papers 9
J. Craig Venter Institute
Co-authored papers 8
Center for Computational Biology, Johns Hopkins School of Medicine
Co-authored papers 8
University of Central Florida
Co-authored papers 8
Johns Hopkins Bayview Research Campus
Co-authored papers 8
Co-authored papers 8
Ludwig Institute for Cancer Research
Co-authored papers 8
Mayo Clinic
Co-authored papers 7
Co-authored papers 7
Co-authored papers 7
Oncology R&D
Co-authored papers 6
Euclid Diagnostics LLC
Co-authored papers 6
Case Western Reserve University School of Medicine
Co-authored papers 6
J. Craig Venter Institute
Co-authored papers 6
J. Craig Venter Institute
Co-authored papers 6
Co-authored papers 6
Bluestar Genomics Inc.
Co-authored papers 6
Vanderbilt University, Columbia University Medical Center
Co-authored papers 5
Center for Computational Biology, Johns Hopkins University
Co-authored papers 5
Co-authored papers 5
J. Craig Venter Institute
Co-authored papers 5
University of California San Diego
Co-authored papers 5
Institut fur Informatik, Freie Universitat Berlin
Co-authored papers 5
McLean Hospital
Co-authored papers 4
Co-authored papers 4
University of Utah
Co-authored papers 4