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Author Details

Christine C Wu
University of Washington
1990
58
32
PMIDPaper TitleJournal TitlePublished Year
36899164Sampling the proteome by emerging single-molecule and mass spectrometry methods.Nat Methods2023
37527417Dynamic Data-Independent Acquisition Mass Spectrometry with Real-Time Retrospective Alignment.Anal Chem2023
37398334Evaluating the Performance of the Astral Mass Analyzer for Quantitative Proteomics Using Data Independent Acquisition.bioRxiv2023
35220718Putting Humpty Dumpty Back Together Again: What Does Protein Quantification Mean in Bottom-Up Proteomics?J Proteome Res2022
35512256Tandem Mass Spectrometry-Based Amyloid Typing Using Manual Microdissection and Open-Source Data Processing.Am J Clin Pathol2022
28728878A mass spectrometry-based proteomic analysis of Homer2-interacting proteins in the mouse brain.J Proteomics2017
26740627VAMP-associated Proteins (VAP) as Receptors That Couple Cystic Fibrosis Transmembrane Conductance Regulator (CFTR) Proteostasis with Lipid Homeostasis.J Biol Chem2016
23820513Maximizing peptide identification events in proteomic workflows using data-dependent acquisition (DDA).Mol Cell Proteomics2014
23289783Context-sensitive markov models for peptide scoring and identification from tandem mass spectrometry.OMICS2013
23625411Label-free differential analysis of murine postsynaptic densities.Methods Mol Biol2013
23793237Multiplexed MS/MS for improved data-independent acquisition.Nat Methods2013
23517085Improved precision of proteomic measurements in immunoprecipitation based purifications using relative quantitation.Anal Chem2013
22454539Platform-independent and label-free quantitation of proteomic data using MS1 extracted ion chromatograms in skyline: application to protein acetylation and phosphorylation.Mol Cell Proteomics2012
22976027Proteomic characterization of integral membrane proteins using thermostatted liquid chromatography coupled with tandem mass spectrometry.Methods Mol Biol2012
21663664Identification of ejaculated proteins in the house mouse (Mus domesticus) via isotopic labeling.BMC Genomics2011
21616670Mass spectrometry accelerates membrane protein analysis.Trends Biochem Sci2011
19965608Proteomic insights into an expanded cellular role for cytoplasmic lipid droplets.J Lipid Res2010
20373813Quantitative improvements in peptide recovery at elevated chromatographic temperatures from microcapillary liquid chromatography-mass spectrometry analyses of brain using selected reaction monitoring.Anal Chem2010
19153700MudPIT analysis: application to human heart tissue.Methods Mol Biol2009
19398505Quantitative strategies to fuel the merger of discovery and hypothesis-driven shotgun proteomics.Brief Funct Genomic Proteomic2009
18189369Label-free comparative analysis of proteomics mixtures using chromatographic alignment of high-resolution muLC-MS data.Anal Chem2008
23584870Proteomic solutions for analytical challenges associated with alcohol research.Alcohol Res Health2008
18780350Chromatographic benefits of elevated temperature for the proteomic analysis of membrane proteins.Proteomics2008
18803417High quality catalog of proteotypic peptides from human heart.J Proteome Res2008
18537282A shotgun proteomic method for the identification of membrane-embedded proteins and peptides.J Proteome Res2008
18370019Proteomic characterization of membrane protein topology.Methods Mol Biol2008
18370009Proteomic analysis of the stacked Golgi complex.Methods Mol Biol2008
18385516The role of GRASP55 in Golgi fragmentation and entry of cells into mitosis.Mol Biol Cell2008
17484118Computational analysis of quantitative proteomics data using stable isotope labeling.Methods Mol Biol2007
17900104Proteomic identification of the cerebral cavernous malformation signaling complex.J Proteome Res2007
17683161Proteomics of integral membrane proteins--theory and application.Chem Rev2007
1737594915N metabolic labeling of mammalian tissue with slow protein turnover.J Proteome Res2007
17353200Advances in neuromembrane proteomics: efforts towards a comprehensive analysis of membrane proteins in the brain.Brief Funct Genomic Proteomic2007
17500534Shotgun analysis of integral membrane proteins facilitated by elevated temperature.Anal Chem2007
17484119Quantitative proteomic analysis of mammalian organisms using metabolically labeled tissues.Methods Mol Biol2007
16573589DNA microarray and proteomic strategies for understanding alcohol action.Alcohol Clin Exp Res2006
16906711Analysis of peptide MS/MS spectra from large-scale proteomics experiments using spectrum libraries.Anal Chem2006
16478131Quantitative comparison of proteomic data quality between a 2D and 3D quadrupole ion trap.Anal Chem2006
16019221Direct qualitative analysis of triacylglycerols by electrospray mass spectrometry using a linear ion trap.J Am Soc Mass Spectrom2005
16447975Peptide charge state determination for low-resolution tandem mass spectra.Proc IEEE Comput Syst Bioinform Conf2005
16237037Chlamydial GroEL autoregulates its own expression through direct interactions with the HrcA repressor protein.J Bacteriol2005
16316172Measurement of the isotope enrichment of stable isotope-labeled proteins using high-resolution mass spectra of peptides.Anal Chem2005
16109712Enhanced ubiquitylation and accelerated degradation of the dopamine transporter mediated by protein kinase C.J Biol Chem2005
15047867Organellar proteomics reveals Golgi arginine dimethylation.Mol Biol Cell2004
15373428Metabolic labeling of mammalian organisms with stable isotopes for quantitative proteomic analysis.Anal Chem2004
12610573The application of mass spectrometry to membrane proteomics.Nat Biotechnol2003
12918992Similarity among tandem mass spectra from proteomic experiments: detection, significance, and utility.Anal Chem2003
14670053A correlation algorithm for the automated quantitative analysis of shotgun proteomics data.Anal Chem2003
12692561A method for the comprehensive proteomic analysis of membrane proteins.Nat Biotechnol2003
12433093Probability-based validation of protein identifications using a modified SEQUEST algorithm.Anal Chem2002
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Collaborators

Michael J MacCoss
University of Washington
Co-authored papers 27
John R Yates
TheScripps Research Institute
Co-authored papers 15
Brendan MacLean
Co-authored papers 3
William Stafford Noble
Co-authored papers 3
Michael R Hoopmann
Institute for Systems Biology
Co-authored papers 2
Kathleen A Grant
Oregon National Primate Research Center, Oregon Health and Science University.
Co-authored papers 2
Michael Riffle
University of Washington
Co-authored papers 1
Nikolai Slavov
and Barnett Institute, Northeastern University
Co-authored papers 1
Wei-Wen Cai
College of Animal Science and Veterinary Medicine, Shenyang Agricultural University
Co-authored papers 1
Lisa M Bramer
Co-authored papers 1
Eric Verdin
Buck Institute for Research on Aging
Co-authored papers 1
Mark S Lowenthal
Co-authored papers 1
Michael W Nachman
Co-authored papers 1
Robert Hitzemann
Portland Alcohol Research Center, Oregon Health and Science University
Co-authored papers 1
Paula L Hoffman
University of Colorado
Co-authored papers 1
Boris Tabakoff
University of Colorado Health Science Center
Co-authored papers 1
Birgit Schilling
Buck Institute for Research on Aging
Co-authored papers 1
Erik J MacLaren
Wellcome Trust Sanger Institute
Co-authored papers 1
Bradford W Gibson
The Buck Institute for Research on Aging
Co-authored papers 1
Thomas J Montine
Stanford University
Co-authored papers 1
Daniel B McClatchy
Co-authored papers 1
Robert C Murphy
Co-authored papers 1
Jimmy K Eng
University of Washington
Co-authored papers 1
Shannon K McWeeney
Oregon Health & Science University, University of California Berkeley
Co-authored papers 1
Michael F Miles
Virginia Commonwealth University
Co-authored papers 1
Neil L Kelleher
Northwestern University
Co-authored papers 1
Michael P Cusack
Co-authored papers 1
James M Sikela
University of Colorado
Co-authored papers 1
Anis Karimpour-Fard
University of Colorado
Co-authored papers 1
Chris Downing
Institute for Behavioral Genetics, University of Colorado
Co-authored papers 1
Release 1.2