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Author Details

Dana Pe'er
Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center
2000
110
58
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37127830Conserved transcriptional connectivity of regulatory T cells in the tumor microenvironment informs new combination cancer therapy strategies.Nat Immunol2023
38014231Deep generative model deciphers derailed trajectories in acute myeloid leukemia.bioRxiv2023
37662289Progressive plasticity during colorectal cancer metastasis.bioRxiv2023
36993586Leptomeningeal anti-tumor immunity follows unique signaling principles.bioRxiv2023
36991128STING inhibits the reactivation of dormant metastasis in lung adenocarcinoma.Nature2023
37387147scKINETICS: inference of regulatory velocity with single-cell transcriptomics data.Bioinformatics2023
37080161Modeling collective cell behavior in cancer: Perspectives from an interdisciplinary conversation.Cell Syst2023
36973557SEACells infers transcriptional and epigenomic cellular states from single-cell genomics data.Nat Biotechnol2023
37167403Epigenetic plasticity cooperates with cell-cell interactions to direct pancreatic tumorigenesis.Science2023
37034770Single-cell analysis of bidirectional reprogramming between early embryonic states reveals mechanisms of differential lineage plasticities.bioRxiv2023
37034672Distinct tumor architectures for metastatic colonization of the brain.bioRxiv2023
37131616The covariance environment defines cellular niches for spatial inference.bioRxiv2023
37029126Cross-platform dataset of multiplex fluorescent cellular object image annotations.Sci Data2023
35027767CellRank for directed single-cell fate mapping.Nat Methods2022
35469013Cell type and gene expression deconvolution with BayesPrism enables Bayesian integrative analysis across bulk and single-cell RNA sequencing in oncology.Nat Cancer2022
35728595Lymphatics act as a signaling hub to regulate intestinal stem cell activity.Cell Stem Cell2022
36313536Protocol to dissociate, process, and analyze the human lung tissue using single-cell RNA-seq.STAR Protoc2022
35952360Systematic Comparison of Pancreatic Ductal Adenocarcinoma Models Identifies a Conserved Highly Plastic Basal Cell State.Cancer Res2022
35981096Lineage plasticity in prostate cancer depends on JAK/STAT inflammatory signaling.Science2022
36344707MACHETE identifies interferon-encompassing chromosome 9p21.3 deletions as mediators of immune evasion and metastasis.Nat Cancer2022
35319989Radiotherapy orchestrates natural killer cell dependent antitumor immune responses through CXCL8.Sci Adv2022
35290801Spatial CRISPR genomics identifies regulators of the tumor microenvironment.Cell2022
33184911Frontiers in cancer immunotherapy-a symposium report.Ann N Y Acad Sci2021
33536616A gene-environment-induced epigenetic program initiates tumorigenesis.Nature2021
33558694Fully defined human pluripotent stem cell-derived microglia and tri-culture system model C3 production in Alzheimer's disease.Nat Neurosci2021
33891860A unified atlas of CD8 T cell dysfunctional states in cancer and infection.Mol Cell2021
34758319Mapping the evolution of T cell states during response and resistance to adoptive cellular therapy.Cell Rep2021
34375606Tumor heterogeneity.Cancer Cell2021
34653364Signatures of plasticity, metastasis, and immunosuppression in an atlas of human small cell lung cancer.Cancer Cell2021
32203275Publisher Correction: Lineage plasticity in cancer: a shared pathway of therapeutic resistance.Nat Rev Clin Oncol2020
35122071Author Correction: L1CAM defines the regenerative origin of metastasis-initiating cells in colorectal cancer.Nat Cancer2020
31873309Immune profiling of human tumors identifies CD73 as a combinatorial target in glioblastoma.Nat Med2020
32042191Regenerative lineages and immune-mediated pruning in lung cancer metastasis.Nat Med2020
32004492Adult Human Glioblastomas Harbor Radial Glia-like Cells.Stem Cell Reports2020
31911548Tumor Analyses Reveal Squamous Transformation and Off-Target Alterations As Early Resistance Mechanisms to First-line Osimertinib in <i>EGFR</i>-Mutant Lung Cancer.Clin Cancer Res2020
33125890Single-Cell Transcriptomics Reveals Early Emergence of Liver Parenchymal and Non-parenchymal Cell Lineages.Cell2020
32656539L1CAM defines the regenerative origin of metastasis-initiating cells in colorectal cancer.Nat Cancer2020
32675368Cancer cells deploy lipocalin-2 to collect limiting iron in leptomeningeal metastasis.Science2020
32726565A Single-Cell Atlas of the Human Healthy Airways.Am J Respir Crit Care Med2020
32668221Adult Human Glioblastomas Harbor Radial Glia-like Cells.Stem Cell Reports2020
32152485Lineage plasticity in cancer: a shared pathway of therapeutic resistance.Nat Rev Clin Oncol2020
32525899Notch3 signaling promotes tumor cell adhesion and progression in a murine epithelial ovarian cancer model.PLoS One2020
32355025Regenerative potential of prostate luminal cells revealed by single-cell analysis.Science2020
30959515The emergent landscape of the mouse gut endoderm at single-cell resolution.Nature2019
31668803Transcriptional Basis of Mouse and Human Dendritic Cell Heterogeneity.Cell2019
31636208Combination anti-CTLA-4 plus anti-PD-1 checkpoint blockade utilizes cellular mechanisms partially distinct from monotherapies.Proc Natl Acad Sci U S A2019
31534198Author Correction: Characterization of cell fate probabilities in single-cell data with Palantir.Nat Biotechnol2019
31495782Cohesin Members Stag1 and Stag2 Display Distinct Roles in Chromatin Accessibility and Topological Control of HSC Self-Renewal and Differentiation.Cell Stem Cell2019
31228622Concurrent RB1 and TP53 Alterations Define a Subset of EGFR-Mutant Lung Cancers at risk for Histologic Transformation and Inferior Clinical Outcomes.J Thorac Oncol2019
31506382Engineering γδT cells limits tonic signaling associated with chimeric antigen receptors.Sci Signal2019
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Collaborators

Garry P Nolan
Stanford University School of Medicine
Co-authored papers 12
El-Ad David Amir
Co-authored papers 7
Charles M Rudin
Memorial Sloan Kettering Cancer Center
Co-authored papers 7
Ambrose J Carr
Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center
Co-authored papers 7
Richard Koche
Memorial Sloan Kettering Cancer Center
Co-authored papers 5
Aviv Regev
Broad Institute of MIT and Harvard
Co-authored papers 5
Charles L Sawyers
Memorial Sloan Kettering Cancer Center
Co-authored papers 4
Elisa de Stanchina
Co-authored papers 4
Bernd Bodenmiller
University of Zurich
Co-authored papers 4
Karen Sachs
Co-authored papers 4
Nir Friedman
Co-authored papers 3
Kara L Davis
Stanford University School of Medicine
Co-authored papers 3
Miriam Merad
The Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai
Co-authored papers 3
Daphne Koller
Stanford University
Co-authored papers 3
Andrea Califano
Columbia University
Co-authored papers 3
John T Poirier
Laura and Isaac Perlmutter Cancer Center
Co-authored papers 3
Christina S Leslie
Co-authored papers 3
Andrew Chow
Co-authored papers 3
Nir Friedman
Weizmann Institute of Science
Co-authored papers 2
Antonio Iavarone
Sylvester Comprehensive Cancer Center, Miller School of Medicine, University of Miami
Co-authored papers 2
Aim??e M Dudley
Pacific Northwest Research Institute
Co-authored papers 2
Su-In Lee
University of Washington
Co-authored papers 2
Travis J Hollmann
Memorial Sloan Kettering Cancer Center
Co-authored papers 2
Nir Hacohen
Broad Institute of MIT and Harvard
Co-authored papers 2
Benjamin D Greenbaum
Memorial Sloan Kettering Cancer Center
Co-authored papers 2
Deanna M Church
Present address: Inscripta Inc.
Co-authored papers 2
Catherine J Wu
Co-authored papers 2
Oliver Stegle
Wellcome Sanger Institute
Co-authored papers 2
Gregory J Riely
Memorial Sloan Kettering Cancer Center
Co-authored papers 2
Douglas A Lauffenburger
Massachusetts Institute of Technology
Co-authored papers 2
Release 1.2