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Author Details

Feng Luo
Clemson University
2004
80
24
PMIDPaper TitleJournal TitlePublished Year
36878904High-throughput Pore-C reveals the single-allele topology and cell type-specificity of 3D genome folding.Nat Commun2023
37595026Genetic architecture of source-sink-regulated senescence in maize.Plant Physiol2023
37422489DNA 5-methylcytosine detection and methylation phasing using PacBio circular consensus sequencing.Nat Commun2023
37149708High-throughput and high-accuracy single-cell RNA isoform analysis using PacBio circular consensus sequencing.Nat Commun2023
36548365NanoSNP: a progressive and haplotype-aware SNP caller on low-coverage nanopore sequencing data.Bioinformatics2023
33211664SACall: A Neural Network Basecaller for Oxford Nanopore Sequencing Data Based on Self-Attention Mechanism.IEEE/ACM Trans Comput Biol Bioinform2022
35669704Editing the <i>CsDMR6</i> gene in citrus results in resistance to the bacterial disease citrus canker.Hortic Res2022
35714960Stable and rapid partial nitrification achieved by boron stimulating autoinducer-2 mediated quorum sensing at room &amp; low temperature.Chemosphere2022
36643761A chromosome-level phased genome enabling allele-level studies in sweet orange: a case study on citrus Huanglongbing tolerance.Hortic Res2022
35992711Rabbit hemorrhagic disease virus VP60 protein expressed in recombinant swinepox virus self-assembles into virus-like particles with strong immunogenicity in rabbits.Front Microbiol2022
35977383Fec: a fast error correction method based on two-rounds overlapping and caching.Bioinformatics2022
34850346Effective adsorption of nutrients from simulated domestic sewage by modified maifanite.Environ Sci Pollut Res Int2022
34619757BlockPolish: accurate polishing of long-read assembly via block divide-and-conquer.Brief Bioinform2022
33397900Efficient assembly of nanopore reads via highly accurate and intact error correction.Nat Commun2021
33600358Function of quorum sensing and cell signaling in wastewater treatment systems.Water Sci Technol2021
33706092Effects of bentonite on the growth process of submerged macrophytes and sediment microenvironment.J Environ Manage2021
34645826Genome-wide detection of cytosine methylations in plant from Nanopore data using deep learning.Nat Commun2021
34531892Selection and Evaluation of a Thornless and HLB-Tolerant Bud-Sport of Pummelo Citrus With an Emphasis on Molecular Mechanisms.Front Plant Sci2021
33973998NeuralPolish: a novel Nanopore polishing method based on alignment matrix construction and orthogonal Bi-GRU Networks.Bioinformatics2021
31323298Genome-wide identification, expression profiling, and network analysis of AT-hook gene family in maize.Genomics2020
35520405Chi-MIC-share: a new feature selection algorithm for quantitative structure-activity relationship models.RSC Adv2020
32082366A Novel Method to Efficiently Highlight Nonlinearly Expressed Genes.Front Genet2020
31780227Potential of jasmonic acid (JA) in accelerating postharvest yellowing of broccoli by promoting its chlorophyll degradation.Food Chem2020
31386102MultiGuideScan: a multi-processing tool for designing CRISPR guide RNA libraries.Bioinformatics2020
30927694Transcriptome analysis of harvested bell peppers (Capsicum annuum L.) in response to cold stress.Plant Physiol Biochem2019
31239390Integrated Genome-Scale Analysis Identifies Novel Genes and Networks Underlying Senescence in Maize.Plant Cell2019
31231532Transcriptome profiling reveals the roles of pigment mechanisms in postharvest broccoli yellowing.Hortic Res2019
31253313Chlorophyll degradation and carotenoid biosynthetic pathways: Gene expression and pigment content in broccoli during yellowing.Food Chem2019
30994904DeepSignal: detecting DNA methylation state from Nanopore sequencing reads using deep-learning.Bioinformatics2019
31133004A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism.BMC Genomics2019
29794985A Rare De Novo <i>RAI1</i> Gene Mutation Affecting BDNF-Enhancer-Driven Transcription Activity Associated with Autism and Atypical Smith-Magenis Syndrome Presentation.Biology (Basel)2018
35559287Effects of methyl jasmonate and melatonin treatments on the sensory quality and bioactive compounds of harvested broccoli.RSC Adv2018
30083178Proteomic Analysis of Ubiquitinated Proteins in Rice (<i>Oryza sativa</i>) After Treatment With Pathogen-Associated Molecular Pattern (PAMP) Elicitors.Front Plant Sci2018
30017583N<sup>6</sup>-Methyladenine DNA Modification in the Human Genome.Mol Cell2018
30389999N6-Methyladenine DNA modification in Xanthomonas oryzae pv. oryzicola genome.Sci Rep2018
28945707MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads.Nat Methods2017
28968436Identifying and sequencing a Mycobacterium sp. strain F4 as a potential bioremediation agent for quinclorac.PLoS One2017
28955443Solar thermotherapy reduces the titer of <i>Candidatus</i> Liberibacter asiaticus and enhances canopy growth by altering gene expression profiles in HLB-affected citrus plants.Hortic Res2017
27446161Transcriptome Profiling of Huanglongbing (HLB) Tolerant and Susceptible Citrus Plants Reveals the Role of Basal Resistance in HLB Tolerance.Front Plant Sci2016
27333001A New Algorithm to Optimize Maximal Information Coefficient.PLoS One2016
25061067Predicting protein phosphorylation from gene expression: top methods from the IMPROVER Species Translation Challenge.Bioinformatics2015
26440265Optimal mass transport for shape matching and comparison.IEEE Trans Pattern Anal Mach Intell2015
26508590Association analyses of large-scale glycan microarray data reveal novel host-specific substructures in influenza A virus binding glycans.Sci Rep2015
26209673Effects of Chicken Litter Storage Time and Ammonia Content on Thermal Resistance of Desiccation-Adapted Salmonella spp.Appl Environ Microbiol2015
26241472Identification of MicroRNAs in Meloidogyne incognita Using Deep Sequencing.PLoS One2015
25811466Genome-wide comparative analysis reveals similar types of NBS genes in hybrid Citrus sinensis genome and original Citrus clementine genome and provides new insights into non-TIR NBS genes.PLoS One2015
25244184Isolation, identification and characteristics of an endophytic quinclorac degrading bacterium Bacillus megaterium Q3.PLoS One2014
23409071Massive-scale gene co-expression network construction and robustness testing using random matrix theory.PLoS One2013
24051851Area-preservation mapping using optimal mass transport.IEEE Trans Vis Comput Graph2013
22156918A quantitative structure-activity relationship (QSAR) study on glycan array data to determine the specificities of glycan-binding proteins.Glycobiology2012
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Collaborators

Jizhong Zhou
Institute for Environmental Genomics, University of Oklahoma
Co-authored papers 11
Yunfeng Yang
Tsinghua University
Co-authored papers 7
Ye Deng
Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences
Co-authored papers 4
Zhili He
Environmental Microbiomics Research Center, Sun Yat-Sen University
Co-authored papers 4
Christopher A Saski
Co-authored papers 4
Richard H Scheuermann
J. Craig Venter Institute
Co-authored papers 3
Stephen P Ficklin
Washington State University
Co-authored papers 3
Xin Gao
King Abdullah University of Science and Technology (KAUST)
Co-authored papers 2
Marcin P Joachimiak
E O Lawrence Berkeley National Laboratory, UCSF Medical Center, University of California, Berkeley, University of Chicago
Co-authored papers 2
Anthony V Palumbo
Oak Ridge National Laboratory
Co-authored papers 2
Liyou Wu
Institute for Environmental Genomics, University of Oklahoma
Co-authored papers 2
Yizhi Liu
Sun Yat-sen University
Co-authored papers 2
Daniel P Harris
Case Western Reserve University
Co-authored papers 2
Adam P Arkin
Lawrence Berkeley National Laboratory
Co-authored papers 2
Nancy J Cox
Vanderbilt University Medical Center
Co-authored papers 1
Nan Zhao
Department of Computer Science and Informatics Institute, University of Missouri
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Anna Lipzen
Co-authored papers 1
Aifen Zhou
University of Oklahoma
Co-authored papers 1
Yuko Yoshinaga
Co-authored papers 1
Judy D Wall
University of Missouri
Co-authored papers 1
Janet Jacobsen
Co-authored papers 1
Zamin K Yang
Oak Ridge National Laboratory
Co-authored papers 1
Fang-Xiang Wu
University of Saskatchewan
Co-authored papers 1
Shengqiang Shu
US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 1
Wenlu Xiong
Co-authored papers 1
Aindrila Mukhopadhyay
Joint BioEnergy Institute
Co-authored papers 1
Cindy Skinner
Co-authored papers 1
Qiang He
University of Tennessee
Co-authored papers 1
Paramvir S Dehal
Lawrence Berkeley National Laboratory
Co-authored papers 1
Raquel Norel
IBM T.J. Watson Research Center
Co-authored papers 1
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