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Author Details

Omer Ali Bayraktar
Wellcome Sanger Institute
2008
32
20
PMIDPaper TitleJournal TitlePublished Year
36894313Identification of a protein expression signature distinguishing early from organising diffuse alveolar damage in COVID-19 patients.J Clin Pathol2023
37590359Yolk sac cell atlas reveals multiorgan functions during human early development.Science2023
37986877A spatial human thymus cell atlas mapped to a continuous tissue axis.bioRxiv2023
37562402Distinct molecular profiles of skull bone marrow in health and neurological disorders.Cell2023
36894313Identification of a protein expression signature distinguishing early from organising diffuse alveolar damage in COVID-19 patients.J Clin Pathol2023
36997759Norepinephrine links astrocytic activity to regulation of cortical state.Nat Neurosci2023
36865282OME-Zarr: a cloud-optimized bioimaging file format with international community support.bioRxiv2023
36543915A spatially resolved atlas of the human lung characterizes a gland-associated immune niche.Nat Genet2023
36539619Author Correction: Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro.Nat Genet2023
36991123Spatial multiomics map of trophoblast development in early pregnancy.Nature2023
37562402Distinct molecular profiles of skull bone marrow in health and neurological disorders.Cell2023
37590359Yolk sac cell atlas reveals multiorgan functions during human early development.Science2023
37986877A spatial human thymus cell atlas mapped to a continuous tissue axis.bioRxiv2023
36991123Spatial multiomics map of trophoblast development in early pregnancy.Nature2023
36997759Norepinephrine links astrocytic activity to regulation of cortical state.Nat Neurosci2023
36543915A spatially resolved atlas of the human lung characterizes a gland-associated immune niche.Nat Genet2023
36539619Author Correction: Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro.Nat Genet2023
36865282OME-Zarr: a cloud-optimized bioimaging file format with international community support.bioRxiv2023
34871544Post-mortem lung tissue: the fossil record of the pathophysiology and immunopathology of severe COVID-19.Lancet Respir Med2022
36174572Myeloid cell interferon secretion restricts Zika flavivirus infection of developing and malignant human neural progenitor cells.Neuron2022
36352222Spatial genomics maps the structure, nature and evolution of cancer clones.Nature2022
35794482Single-cell roadmap of human gonadal development.Nature2022
35027729Cell2location maps fine-grained cell types in spatial transcriptomics.Nat Biotechnol2022
34871544Post-mortem lung tissue: the fossil record of the pathophysiology and immunopathology of severe COVID-19.Lancet Respir Med2022
35794482Single-cell roadmap of human gonadal development.Nature2022
36174572Myeloid cell interferon secretion restricts Zika flavivirus infection of developing and malignant human neural progenitor cells.Neuron2022
36352222Spatial genomics maps the structure, nature and evolution of cancer clones.Nature2022
35027729Cell2location maps fine-grained cell types in spatial transcriptomics.Nat Biotechnol2022
34021280REMBI: Recommended Metadata for Biological Images-enabling reuse of microscopy data in biology.Nat Methods2021
34162837Single cell derived mRNA signals across human kidney tumors.Nat Commun2021
34083789A map of transcriptional heterogeneity and regulatory variation in human microglia.Nat Genet2021
34021280REMBI: Recommended Metadata for Biological Images-enabling reuse of microscopy data in biology.Nat Methods2021
33547074Tumor to normal single-cell mRNA comparisons reveal a pan-neuroblastoma cancer cell.Sci Adv2021
34857954Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro.Nat Genet2021
34497389Cells of the human intestinal tract mapped across space and time.Nature2021
33547074Tumor to normal single-cell mRNA comparisons reveal a pan-neuroblastoma cancer cell.Sci Adv2021
34857954Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro.Nat Genet2021
34497389Cells of the human intestinal tract mapped across space and time.Nature2021
34083789A map of transcriptional heterogeneity and regulatory variation in human microglia.Nat Genet2021
34162837Single cell derived mRNA signals across human kidney tumors.Nat Commun2021
32394386Automation of Multiplexed RNAscope Single-Molecule Fluorescent In Situ Hybridization and Immunohistochemistry for Spatial Tissue Mapping.Methods Mol Biol2020
32203496Astrocyte layers in the mammalian cerebral cortex revealed by a single-cell in situ transcriptomic map.Nat Neurosci2020
32079746A cell atlas of human thymic development defines T cell repertoire formation.Science2020
32394386Automation of Multiplexed RNAscope Single-Molecule Fluorescent In Situ Hybridization and Immunohistochemistry for Spatial Tissue Mapping.Methods Mol Biol2020
32079746A cell atlas of human thymic development defines T cell repertoire formation.Science2020
32203496Astrocyte layers in the mammalian cerebral cortex revealed by a single-cell in situ transcriptomic map.Nat Neurosci2020
31316211Neuronal vulnerability and multilineage diversity in multiple sclerosis.Nature2019
31316211Neuronal vulnerability and multilineage diversity in multiple sclerosis.Nature2019
29134361Sonic Hedgehog Agonist Protects Against Complex Neonatal Cerebellar Injury.Cerebellum2018
29134361Sonic Hedgehog Agonist Protects Against Complex Neonatal Cerebellar Injury.Cerebellum2018
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Collaborators

Sarah A Teichmann
Wellcome Sanger Institute
Co-authored papers 10
Muzlifah Haniffa
Wellcome Sanger Institute
Co-authored papers 8
Roger A Barker
John Van Geest Center for Brain Repair, University of Cambridge
Co-authored papers 6
David H Rowitch
Wellcome Trust-Medical Research Council Stem Cell Institute and.
Co-authored papers 5
Oliver Stegle
Wellcome Sanger Institute
Co-authored papers 4
Chris Q Doe
Institute of Neuroscience, Howard Hughes Medical Institute, University of Oregon
Co-authored papers 4
Martin Prete
Wellcome Sanger Institute
Co-authored papers 4
John C Marioni
Cancer Research UK Cambridge Institute, University of Cambridge
Co-authored papers 3
Thanasis Margaritis
Princess Maxima Center for Pediatric Oncology
Co-authored papers 2
Shuichi Onami
RIKEN Center for Biosystems Dynamics Research
Co-authored papers 2
Michael R Stratton
Wellcome Sanger Institute
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Karin Straathof
Co-authored papers 2
Fabian J Theis
Technical University of Munich
Co-authored papers 2
Frank C P Holstege
Princess Maxima Center for Pediatric Oncology
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Neil J Sebire
NIHR Great Ormond Street Biomedical Research Centre
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Moritz Gerstung
German Cancer Research Centre DKFZ
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Cecilia Lindskog
Uppsala University
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Josh Moore
University of Dundee
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Christian Tischer
Center for Bioimage Analysis
Co-authored papers 2
Mercedes Jimenez-Linan
University of Cambridge
Co-authored papers 2
Jason R Swedlow
University of Dundee
Co-authored papers 2
Giovanni Palla
Institute of Computational Biology
Co-authored papers 1
Melissa Linkert
Glencoe Software Inc.
Co-authored papers 1
Khaled Mohamed
University of Dundee
Co-authored papers 1
Merlin Lange
Co-authored papers 1
Lucas Pelkmans
University of Zurich
Co-authored papers 1
Maria Harkiolaki
Co-authored papers 1
Marcel Kool
Hopp Children's Cancer Center (KiTZ)
Co-authored papers 1
James Palis
Co-authored papers 1
Jan Ellenberg
Institute of Child Health and Human Development
Co-authored papers 1
Release 1.2