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Author Details

Jiewei Xu
Quantitative Biosciences Institute (QBI), University of California san francisco
2012
24
11
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37090610A proximity proteomics pipeline with improved reproducibility and throughput.bioRxiv2024
37052498CDBN-YGXZ, a Novel Small-Molecule Drug, Shows Efficacy against Clostridioides difficile Infection and Recurrence in Mouse and Hamster Infection Models.Antimicrob Agents Chemother2023
37738970SARS-CoV-2 variants evolve convergent strategies to remodel the host response.Cell2023
35082446Brahma safeguards canalization of cardiac mesoderm differentiation.Nature2022
35392234LncRNA RP11-138J23.1 Contributes to Gastric Cancer Progression by Interacting With RNA-Binding Protein HuR.Front Oncol2022
36075902Structure-function analysis of enterovirus protease 2A in complex with its essential host factor SETD3.Nat Commun2022
34646016Systems-level effects of allosteric perturbations to a model molecular switch.Nature2021
32353859A SARS-CoV-2 protein interaction map reveals targets for drug repurposing.Nature2020
32084337A Quantitative Genetic Interaction Map of HIV Infection.Mol Cell2020
33060197Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms.Science2020
33303586Genetic interaction mapping informs integrative structure determination of protein complexes.Science2020
32645325The Global Phosphorylation Landscape of SARS-CoV-2 Infection.Cell2020
31527793Enterovirus pathogenesis requires the host methyltransferase SETD3.Nat Microbiol2019
28733394Genetic Interaction Mapping in <i>Schizosaccharomyces pombe</i> Using the Pombe Epistasis Mapper (PEM) System and a ROTOR HDA Colony Replicating Robot in a 1536 Array Format.Cold Spring Harb Protoc2018
30077634Quantitative Yeast Genetic Interaction Profiling of Bacterial Effector Proteins Uncovers a Role for the Human Retromer in Salmonella Infection.Cell Syst2018
30547882Genetic analysis reveals functions of atypical polyubiquitin chains.Elife2018
29127264Protein Moonlighting Revealed by Noncatalytic Phenotypes of Yeast Enzymes.Genetics2018
28733411DNA Preparation from <i>Schizosaccharomyces pombe</i>.Cold Spring Harb Protoc2018
28733406Genetic Interaction Score (S-Score) Calculation, Clustering, and Visualization of Genetic Interaction Profiles for Yeast.Cold Spring Harb Protoc2018
28733397Transformation of <i>Schizosaccharomyces pombe</i> in a 96-Well Format.Cold Spring Harb Protoc2018
25825871Genetic interaction mapping reveals a role for the SWI/SNF nucleosome remodeler in spliceosome activation in fission yeast.PLoS Genet2015
24565511Identification of a BET family bromodomain/casein kinase II/TAF-containing complex as a regulator of mitotic condensin function.Cell Rep2014
25010907Quantitative analysis of triple-mutant genetic interactions.Nat Protoc2014
22681890Hierarchical modularity and the evolution of genetic interactomes across species.Mol Cell2012
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Collaborators

Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 22
Ruth H??ttenhain
Quantitative Biosciences Institute (QBI), University of California san francisco
Co-authored papers 9
Assen Roguev
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Co-authored papers 9
Gwendolyn M Jang
Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes
Co-authored papers 7
Michael Shales
University of California, USA Quantitative Biosciences Institute (QBI) san francisco
Co-authored papers 7
Hannes Braberg
University of California San Francisco
Co-authored papers 6
Danielle L Swaney
J. David Gladstone Institutes
Co-authored papers 6
Pedro Beltrao
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 5
Manon Eckhardt
Quantitative Biosciences Institute (QBI), University of California san francisco
Co-authored papers 5
David E Gordon
Emory University
Co-authored papers 4
Melanie Ott
Gladstone Institute of Virology
Co-authored papers 4
Colm J Ryan
University College Dublin
Co-authored papers 4
Tanja Kortemme
University of California san francisco
Co-authored papers 4
Mehdi Bouhaddou
J. David Gladstone Institutes
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Helene Foussard
Quantitative Biosciences Institute (QBI), University of California san francisco
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Lisa Miorin
Icahn School of Medicine at Mount Sinai
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Margaret Soucheray
J. David Gladstone Institutes
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Kliment A Verba
University of California, University of California San Francisco
Co-authored papers 4
Kirsten Obernier (CM4AI)
University of California San Francisco
Co-authored papers 4
Jyoti Batra
J. David Gladstone Institutes
Co-authored papers 4
Kris M White
Quantitative Biosciences Institute (QBI) Coronavirus Research Group (QCRG)
Co-authored papers 4
Kevan M Shokat
University of California San Francisco
Co-authored papers 4
Robyn M Kaake
J. David Gladstone Institutes
Co-authored papers 4
Danish Memon
European Bioinformatics Institute
Co-authored papers 3
Joseph B Hiatt
Fred Hutchinson Cancer Center
Co-authored papers 3
Brian K Shoichet
Department of Pharmaceutical Chemistry, University of California san francisco
Co-authored papers 3
Marco Vignuzzi
Quantitative Biosciences Institute (QBI) Coronavirus Research Group (QCRG)
Co-authored papers 3
Beril Tutuncuoglu
University of California san francisco
Co-authored papers 3
Ying Shi
Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences
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Andrej Sali (CM4AI)
University of California San Francisco
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