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Author Details

Manon Eckhardt
Quantitative Biosciences Institute (QBI), University of California san francisco
2010
19
12
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37090610A proximity proteomics pipeline with improved reproducibility and throughput.bioRxiv2024
37204043Network modeling suggests HIV infection phenocopies PI3K-AKT pathway mutations to enhance HPV-associated cervical cancer.Mol Omics2023
37758692Proteomic and genetic analyses of influenza A viruses identify pan-viral host targets.Nat Commun2023
37738970SARS-CoV-2 variants evolve convergent strategies to remodel the host response.Cell2023
37019383Quantitative Proteomic Analysis Reveals apoE4-Dependent Phosphorylation of the Actin-Regulating Protein VASP.Mol Cell Proteomics2023
36075902Structure-function analysis of enterovirus protease 2A in complex with its essential host factor SETD3.Nat Commun2022
33434350Mass spectrometry-based protein-protein interaction networks for the study of human diseases.Mol Syst Biol2021
32353859A SARS-CoV-2 protein interaction map reveals targets for drug repurposing.Nature2020
32060427A systems approach to infectious disease.Nat Rev Genet2020
33060197Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms.Science2020
32444466The Landscape of Human Cancer Proteins Targeted by SARS-CoV-2.Cancer Discov2020
31288129Mapping the protein-protein and genetic interactions of cancer to guide precision medicine.Curr Opin Genet Dev2019
30209081Multiple Routes to Oncogenesis Are Promoted by the Human Papillomavirus-Host Protein Network.Cancer Discov2018
26275922Comparative mapping of host-pathogen protein-protein interactions.Curr Opin Microbiol2015
25253335HIV-1 entry in SupT1-R5, CEM-ss, and primary CD4+ T cells occurs at the plasma membrane and does not require endocytosis.J Virol2014
22830600An expanded model of HIV cell entry phenotype based on multi-parameter single-cell data.Retrovirology2012
21799764A SNAP-tagged derivative of HIV-1--a versatile tool to study virus-cell interactions.PLoS One2011
21835422Escape from R-peptide deletion in a γ-retrovirus.Virology2011
20147389CD317/tetherin is enriched in the HIV-1 envelope and downregulated from the plasma membrane upon virus infection.J Virol2010
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Collaborators

Nevan J Krogan (CM4AI)
University of California San Francisco
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Mehdi Bouhaddou
J. David Gladstone Institutes
Co-authored papers 7
Ruth H??ttenhain
Quantitative Biosciences Institute (QBI), University of California san francisco
Co-authored papers 6
Danielle L Swaney
J. David Gladstone Institutes
Co-authored papers 6
Jiewei Xu
Quantitative Biosciences Institute (QBI), University of California san francisco
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Gwendolyn M Jang
Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes
Co-authored papers 5
Jyoti Batra
J. David Gladstone Institutes
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Robyn M Kaake
J. David Gladstone Institutes
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Trey Ideker (CM4AI)
University of California San Diego
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Helene Foussard
Quantitative Biosciences Institute (QBI), University of California san francisco
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Margaret Soucheray
J. David Gladstone Institutes
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Kliment A Verba
University of California, University of California San Francisco
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Kris M White
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University of California San Francisco
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Melanie Ott
Gladstone Institute of Virology
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Merve Cakir
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Veronica V Rezelj
Quantitative Biosciences Institute (QBI) Coronavirus Research Group (QCRG)
Co-authored papers 3
Pedro Beltrao
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 3
Lorena Zuliani-Alvarez
J. David Gladstone Institutes
Co-authored papers 3
Michael J McGregor
J. David Gladstone Institutes
Co-authored papers 3
Lisa Miorin
Icahn School of Medicine at Mount Sinai
Co-authored papers 3
Kirsten Obernier (CM4AI)
University of California San Francisco
Co-authored papers 3
Kelsey M Haas
J. David Gladstone Institutes
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Brian K Shoichet
Department of Pharmaceutical Chemistry, University of California san francisco
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Marco Vignuzzi
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Tia A Tummino
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