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Author Details

Ryan R Brinkman
University of British Columbia
1994
120
44
PMIDPaper TitleJournal TitlePublished Year
35796000flowCut: An R package for automated removal of outlier events and flagging of files based on time versus fluorescence analysis.Cytometry A2023
35796000flowCut: An R package for automated removal of outlier events and flagging of files based on time versus fluorescence analysis.Cytometry A2023
37530476flowSim: Near duplicate detection for flow cytometry data.Cytometry A2023
37530476flowSim: Near duplicate detection for flow cytometry data.Cytometry A2023
34559446Automated identification of maximal differential cell populations in flow cytometry data.Cytometry A2022
36351924Single-cell profiling reveals a memory B cell-like subtype of follicular lymphoma with increased transformation risk.Nat Commun2022
34559446Automated identification of maximal differential cell populations in flow cytometry data.Cytometry A2022
36351924Single-cell profiling reveals a memory B cell-like subtype of follicular lymphoma with increased transformation risk.Nat Commun2022
32222062Occurrence of T-cell and NK-cell subsets with less well-recognized phenotypes in peripheral blood submitted for routine flow cytometry analysis.Cytometry B Clin Cytom2021
32222062Occurrence of T-cell and NK-cell subsets with less well-recognized phenotypes in peripheral blood submitted for routine flow cytometry analysis.Cytometry B Clin Cytom2021
32881398Data File Standard for Flow Cytometry, Version FCS 3.2.Cytometry A2021
32881398Data File Standard for Flow Cytometry, Version FCS 3.2.Cytometry A2021
31515945Improving the Rigor and Reproducibility of Flow Cytometry-Based Clinical Research and Trials Through Automated Data Analysis.Cytometry A2020
32426309Clinical Protocol for a Longitudinal Cohort Study Employing Systems Biology to Identify Markers of Vaccine Immunogenicity in Newborn Infants in The Gambia and Papua New Guinea.Front Pediatr2020
31844327High-throughput phenotyping reveals expansive genetic and structural underpinnings of immune variation.Nat Immunol2020
31637838Single Cell Phenotypic Profiling of 27 DLBCL Cases Reveals Marked Intertumoral and Intratumoral Heterogeneity.Cytometry A2020
32270193The miR-185/PAK6 axis predicts therapy response and regulates survival of drug-resistant leukemic stem cells in CML.Blood2020
33313031Corrigendum: Clinical Protocol for a Longitudinal Cohort Study Employing Systems Biology to Identify Markers of Vaccine Immunogenicity in Newborn Infants in The Gambia and Papua New Guinea.Front Pediatr2020
33250895Systems Biology Methods Applied to Blood and Tissue for a Comprehensive Analysis of Immune Response to Hepatitis B Vaccine in Adults.Front Immunol2020
33193355"Age Related Differences in the Biology of Chronic Graft-Versus-Host Disease After Hematopoietic Stem Cell Transplantation".Front Immunol2020
33329547Multi-Omic Data Integration Allows Baseline Immune Signatures to Predict Hepatitis B Vaccine Response in a Small Cohort.Front Immunol2020
31515945Improving the Rigor and Reproducibility of Flow Cytometry-Based Clinical Research and Trials Through Automated Data Analysis.Cytometry A2020
31844327High-throughput phenotyping reveals expansive genetic and structural underpinnings of immune variation.Nat Immunol2020
31637838Single Cell Phenotypic Profiling of 27 DLBCL Cases Reveals Marked Intertumoral and Intratumoral Heterogeneity.Cytometry A2020
33313031Corrigendum: Clinical Protocol for a Longitudinal Cohort Study Employing Systems Biology to Identify Markers of Vaccine Immunogenicity in Newborn Infants in The Gambia and Papua New Guinea.Front Pediatr2020
33250895Systems Biology Methods Applied to Blood and Tissue for a Comprehensive Analysis of Immune Response to Hepatitis B Vaccine in Adults.Front Immunol2020
33193355"Age Related Differences in the Biology of Chronic Graft-Versus-Host Disease After Hematopoietic Stem Cell Transplantation".Front Immunol2020
33329547Multi-Omic Data Integration Allows Baseline Immune Signatures to Predict Hepatitis B Vaccine Response in a Small Cohort.Front Immunol2020
32270193The miR-185/PAK6 axis predicts therapy response and regulates survival of drug-resistant leukemic stem cells in CML.Blood2020
32426309Clinical Protocol for a Longitudinal Cohort Study Employing Systems Biology to Identify Markers of Vaccine Immunogenicity in Newborn Infants in The Gambia and Papua New Guinea.Front Pediatr2020
30570217Implementation and Validation of an Automated Flow Cytometry Analysis Pipeline for Human Immune Profiling.Cytometry A2019
31633216Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition).Eur J Immunol2019
31833655Cyt-Geist: Current and Future Challenges in Cytometry: Reports of the CYTO 2019 Conference Workshops.Cytometry A2019
30570217Implementation and Validation of an Automated Flow Cytometry Analysis Pipeline for Human Immune Profiling.Cytometry A2019
31077110Data-Driven Flow Cytometry Analysis.Methods Mol Biol2019
31069980Flow cytometry data analysis: Recent tools and algorithms.Int J Lab Hematol2019
31368812Improving the Quality and Reproducibility of Flow Cytometry in the Lung. An Official American Thoracic Society Workshop Report.Am J Respir Cell Mol Biol2019
31207046Cyt-Geist: Current and Future Challenges in Cytometry: Reports of the CYTO 2018 Conference Workshops.Cytometry A2019
31833655Cyt-Geist: Current and Future Challenges in Cytometry: Reports of the CYTO 2019 Conference Workshops.Cytometry A2019
31207046Cyt-Geist: Current and Future Challenges in Cytometry: Reports of the CYTO 2018 Conference Workshops.Cytometry A2019
31368812Improving the Quality and Reproducibility of Flow Cytometry in the Lung. An Official American Thoracic Society Workshop Report.Am J Respir Cell Mol Biol2019
31633216Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition).Eur J Immunol2019
31069980Flow cytometry data analysis: Recent tools and algorithms.Int J Lab Hematol2019
31077110Data-Driven Flow Cytometry Analysis.Methods Mol Biol2019
27342384Use FlowRepository to share your clinical data upon study publication.Cytometry B Clin Cytom2018
30244531Methodology for evaluating and comparing flow cytometers: A multisite study of 23 instruments.Cytometry A2018
30518691A standardized immune phenotyping and automated data analysis platform for multicenter biomarker studies.JCI Insight2018
29534153ddPCRclust: an R package and Shiny app for automated analysis of multiplexed ddPCR data.Bioinformatics2018
29287915High throughput automated analysis of big flow cytometry data.Methods2018
29462241flowLearn: fast and precise identification and quality checking of cell populations in flow cytometry.Bioinformatics2018
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Collaborators

Josef Spidlen
British Columbia Cancer Research Center
Co-authored papers 21
Richard H Scheuermann
J. Craig Venter Institute
Co-authored papers 14
Raphael Gottardo
Fred Hutchinson Cancer Center
Co-authored papers 13
Michael R Hayden
Co-authored papers 12
Ali Bashashati
University of British Columbia
Co-authored papers 8
Wayne A Moore
Stanford University School of Medicine
Co-authored papers 7
Tobias R Kollmann
Telethon Kids Institute
Co-authored papers 7
Holden T Maecker
Co-authored papers 6
Yu Qian
J. Craig Venter Institute
Co-authored papers 5
M??lanie Courtot
Ontario Institute for Cancer Research
Co-authored papers 5
Alan Ruttenberg
University at Buffalo
Co-authored papers 5
Christian J Stoeckert
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 5
Jennifer Fostel
National Institute of Environmental Health Sciences
Co-authored papers 5
Philippe Rocca-Serra
University of Oxford
Co-authored papers 5
Susanna-Assunta Sansone
Oxford e-Research Centre, University of Oxford
Co-authored papers 5
James C S Wood
Comprehensive Cancer Center
Co-authored papers 4
Clayton A Smith
University of Colorado, Aurora CO.
Co-authored papers 4
Chris F Taylor
European Molecular Biology Laboratory- European Bioinformatics Institute
Co-authored papers 4
Norman Morrison
European Bioinformatics Institute
Co-authored papers 4
Helen Parkinson
European Bioinformatics Institute
Co-authored papers 4
Maura Gasparetto
University of Colorado School of Medicine
Co-authored papers 4
Robert Gentleman
Center for Computational Biomedicine, Harvard Medical School
Co-authored papers 4
Florian Hahne
1 Preclinical Safety, Novartis Institutes for Biomedical Research
Co-authored papers 4
Daniel Schober
Institute of Forensic Medicine, University of Bern
Co-authored papers 3
Alexandra Durr
Sorbonne University, Paris Brain Institute - ICM, Inserm, CNRS
Co-authored papers 3
Karin Breuer
Simon Fraser University
Co-authored papers 3
Gilberto Fragoso
NCI Center for Bioinformatics, National Cancer Institute
Co-authored papers 3
Richard H Myers
Co-authored papers 3
Patrick J Morrison
Belfast City Hospital
Co-authored papers 3
Robert E W Hancock
University of British Columbia
Co-authored papers 3
Release 1.2