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Author Details

Frank Kramer
University of Augsburg
1997
51
22
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36853741German Medical Named Entity Recognition Model and Data Set Creation Using Machine Translation and Word Alignment: Algorithm Development and Validation.JMIR Form Res2023
37625508Annotated dataset creation through large language models for non-english medical NLP.J Biomed Inform2023
37387022Evaluation of the Availability of Nursing Quality Indicators in German FHIR Implementations.Stud Health Technol Inform2023
37203586The RCX Extension Hub: A Resource for Implementations Extending the R Adaption of the Cytoscape Exchange Format.Stud Health Technol Inform2023
37203536Towards Automated COVID-19 Presence and Severity Classification.Stud Health Technol Inform2023
36699420RCX-an R package adapting the Cytoscape Exchange format for biological networks.Bioinform Adv2022
35773876Adaptation of HL7 FHIR for the Exchange of Patients' Gene Expression Profiles.Stud Health Technol Inform2022
35675360Data-dependent visualization of biological networks in the web-browser with NDExEdit.PLoS Comput Biol2022
35612112Implementation of Gene Expression Profiles in the HL7 FHIR Standard.Stud Health Technol Inform2022
35612011MISeval: A Metric Library for Medical Image Segmentation Evaluation.Stud Health Technol Inform2022
35673151Perspective on Code Submission and Automated Evaluation Platforms for University Teaching.Stud Health Technol Inform2022
35725483Towards a guideline for evaluation metrics in medical image segmentation.BMC Res Notes2022
35597871Gene-expression profiles of pretreatment biopsies predict complete response of rectal cancer patients to preoperative chemoradiotherapy.Br J Cancer2022
36812581DrNote: An open medical annotation service.PLOS Digit Health2022
33461500MIScnn: a framework for medical image segmentation with convolutional neural networks and deep learning.BMC Med Imaging2021
33706810Explaining decisions of graph convolutional neural networks: patient-specific molecular subnetworks responsible for metastasis prediction in breast cancer.Genome Med2021
34668739Network-Based Approaches Reveal Potential Therapeutic Targets for Host-Directed Antileishmanial Therapy Driving Drug Repurposing.Microbiol Spectr2021
34545816Multi-Disease Detection in Retinal Imaging Based on Ensembling Heterogeneous Deep Learning Models.Stud Health Technol Inform2021
34042629COVID-19 Image Segmentation Based on Deep Learning and Ensemble Learning.Stud Health Technol Inform2021
34337140Robust chest CT image segmentation of COVID-19 lung infection based on limited data.Inform Med Unlocked2021
33371258Multipath: An R Package to Generate Integrated Reproducible Pathway Models.Biology (Basel)2020
30616689The histone methyltransferase DOT1L is required for proper DNA damage response, DNA repair, and modulates chemotherapy responsiveness.Clin Epigenetics2019
31483271Utilizing Molecular Network Information via Graph Convolutional Neural Networks to Predict Metastatic Event in Breast Cancer.Stud Health Technol Inform2019
29087446ndexr-an R package to interface with the network data exchange.Bioinformatics2018
30360563<i>mully</i>: An R Package to Create, Modify and Visualize Multilayered Graphs.Genes (Basel)2018
29699591New perspectives: systems medicine in cardiovascular disease.BMC Syst Biol2018
27896720Working with Ontologies.Methods Mol Biol2017
28811361Chemoradiotherapy Resistance in Colorectal Cancer Cells is Mediated by Wnt/β-catenin Signaling.Mol Cancer Res2017
28554991Changes of Microrna Levels in Plasma of Patients with Rectal Cancer during Chemoradiotherapy.Int J Mol Sci2017
27092493Prognostic Value of MicroRNAs in Preoperative Treated Rectal Cancer.Int J Mol Sci2016
26519181Reconstruction of Protein Networks Using Reverse-Phase Protein Array Data.Methods Mol Biol2016
27655448A simulation framework for correlated count data of features subsets in high-throughput sequencing or proteomics experiments.Stat Appl Genet Mol Biol2016
25990502Preoperative Prediction of Lymph Node Status by Circulating Mir-18b and Mir-20a During Chemoradiotherapy in Patients with Rectal Cancer.World J Surg2015
26632845Newly Constructed Network Models of Different WNT Signaling Cascades Applied to Breast Cancer Expression Data.PLoS One2015
26489510Comparative study on gene set and pathway topology-based enrichment methods.BMC Bioinformatics2015
23934972STAT3 inhibition sensitizes colorectal cancer to chemoradiotherapy in vitro and in vivo.Int J Cancer2014
25210794UDP glucuronosyltransferase 1A expression levels determine the response of colorectal cancer cells to the heat shock protein 90 inhibitor ganetespib.Cell Death Dis2014
24833336R-based software for the integration of pathway data into bioinformatic algorithms.Biology (Basel)2014
23274212rBiopaxParser--an R package to parse, modify and visualize BioPAX data.Bioinformatics2013
23932154Identification of a microRNA expression signature for chemoradiosensitivity of colorectal cancer cells, involving miRNAs-320a, -224, -132 and let7g.Radiother Oncol2013
23224985Nuclear LEF1/TCF4 correlate with poor prognosis but not with nuclear β-catenin in cerebral metastasis of lung adenocarcinomas.Clin Exp Metastasis2013
22216762Systems-wide RNAi analysis of CASP8AP2/FLASH shows transcriptional deregulation of the replication-dependent histone genes and extensive effects on the transcriptome of colorectal cancer cells.Mol Cancer2012
22913342Cohesin is required for expression of the estrogen receptor-alpha (ESR1) gene.Epigenetics Chromatin2012
22681891The histone H2B monoubiquitination regulatory pathway is required for differentiation of multipotent stem cells.Mol Cell2012
21173432β-catenin-independent WNT signaling in basal-like breast cancer and brain metastasis.Carcinogenesis2011
21862633Estrogen-dependent gene transcription in human breast cancer cells relies upon proteasome-dependent monoubiquitination of histone H2B.Cancer Res2011
21983179Silencing of the Wnt transcription factor TCF4 sensitizes colorectal cancer cells to (chemo-) radiotherapy.Carcinogenesis2011
20970032A gene expression signature for chemoradiosensitivity of colorectal cancer cells.Int J Radiat Oncol Biol Phys2010
18262272Interleukin-1beta stimulates acute phase response and C-reactive protein synthesis by inducing an NFkappaB- and C/EBPbeta-dependent autocrine interleukin-6 loop.Mol Immunol2008
15539624Protein kinase C pathway is involved in transcriptional regulation of C-reactive protein synthesis in human hepatocytes.Arterioscler Thromb Vasc Biol2005
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Collaborators

Florian Auer
University of Augsburg
Co-authored papers 8
Thomas Ried
Center for Cancer Research, National Cancer Institute
Co-authored papers 6
Zaynab Hammoud
University of Augsburg
Co-authored papers 4
Jordi Camps
Universitat Autonoma de Barcelona
Co-authored papers 1
Natasha J Caplen
Co-authored papers 1
Dexter Pratt (CM4AI)
UC San Diego
Co-authored papers 1
Tanja Zeller
Co-authored papers 1
Dirk Eick
Helmholtz Center Munich and Center for Integrated Protein Science Munich (CIPSM)
Co-authored papers 1
Eytan Ruppin
National Cancer Institute
Co-authored papers 1
Trey Ideker (CM4AI)
University of California San Diego
Co-authored papers 1
Release 1.2