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Author Details

Riccardo Pellarin
CNRS UMR 5086 and Universite Claude Bernard Lyon 1
2003
51
32
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36509161Coevolution-Guided Mapping of the Type VI Secretion Membrane Complex-Baseplate Interface.J Mol Biol2023
37877240Rational Prediction of PROTAC-Compatible Protein-Protein Interfaces by Molecular Docking.J Chem Inf Model2023
36139128Building Protein Atomic Models from Cryo-EM Density Maps and Residue Co-Evolution.Biomolecules2022
36510358Mono- and Intralink Filter (Mi-Filter) To Reduce False Identifications in Cross-Linking Mass Spectrometry Data.Anal Chem2022
34372705Inhibiting Type VI Secretion System Activity with a Biomimetic Peptide Designed To Target the Baseplate Wedge Complex.mBio2021
33617236Advanced <i>In Vivo</i> Cross-Linking Mass Spectrometry Platform to Characterize Proteome-Wide Protein Interactions.Anal Chem2021
33303586Genetic interaction mapping informs integrative structure determination of protein complexes.Science2020
30393052Bayesian Weighing of Electron Cryo-Microscopy Data for Integrative Structural Modeling.Structure2019
31396911Modeling Biological Complexes Using Integrative Modeling Platform.Methods Mol Biol2019
30890443Role of integrative structural biology in understanding transcriptional initiation.Methods2019
30877094<i>In situ</i> and high-resolution cryo-EM structure of a bacterial type VI secretion system membrane complex.EMBO J2019
28960548Integrative structure modeling with the Integrative Modeling Platform.Protein Sci2018
30323254Biogenesis and structure of a type VI secretion baseplate.Nat Microbiol2018
29642030Simultaneous Determination of Protein Structure and Dynamics Using Cryo-Electron Microscopy.Biophys J2018
29539637Integrative structure and functional anatomy of a nuclear pore complex.Nature2018
27807976A Residue-Resolved Bayesian Approach to Quantitative Interpretation of Hydrogen-Deuterium Exchange from Mass Spectrometry: Application to Characterizing Protein-Ligand Interactions.J Phys Chem B2017
28297669Molecular Landscape of the Ribosome Pre-initiation Complex during mRNA Scanning: Structural Role for eIF3c and Its Control by eIF5.Cell Rep2017
27250206Structure of Complement C3(H2O) Revealed By Quantitative Cross-Linking/Mass Spectrometry And Modeling.Mol Cell Proteomics2016
27839866Structure and Function of the Nuclear Pore Complex Cytoplasmic mRNA Export Platform.Cell2016
26340423Architecture of the Human and Yeast General Transcription and DNA Repair Factor TFIIH.Mol Cell2015
26436480A strategy for dissecting the architectures of native macromolecular assemblies.Nat Methods2015
26402457Molecular architecture of the yeast Mediator complex.Elife2015
24203340Modeling of proteins and their assemblies with the Integrative Modeling Platform.Methods Mol Biol2014
28898626Molecular Architecture of the 40Sâ¿¿eIF1â¿¿eIF3 Translation Initiation Complex.Cell2014
25073740Molecular architecture and function of the SEA complex, a modulator of the TORC1 pathway.Mol Cell Proteomics2014
25173450Uncertainty in integrative structural modeling.Curr Opin Struct Biol2014
25149264Molecular architecture of photoreceptor phosphodiesterase elucidated by chemical cross-linking and integrative modeling.J Mol Biol2014
25171412Molecular architecture of the 40Sâ¿¿eIF1â¿¿eIF3 translation initiation complex.Cell2014
25087511Cys-scanning disulfide crosslinking and bayesian modeling probe the transmembrane signaling mechanism of the histidine kinase, PhoQ.Structure2014
25139910Determining protein complex structures based on a Bayesian model of in vivo Förster resonance energy transfer (FRET) data.Mol Cell Proteomics2014
25161197Structural characterization by cross-linking reveals the detailed architecture of a coatomer-related heptameric module from the nuclear pore complex.Mol Cell Proteomics2014
24726919Elucidating the mechanism of substrate recognition by the bacterial Hsp90 molecular chaperone.J Mol Biol2014
23259849Methylations of tryptophan-modified naphthoquinone affect its inhibitory potential toward Aβ aggregation.J Phys Chem B2013
22724381Photocontrol of reversible amyloid formation with a minimal-design peptide.J Phys Chem B2012
22767482Optimization of designed armadillo repeat proteins by molecular dynamics simulations and NMR spectroscopy.Protein Sci2012
21892833Structural basis for inhibiting β-amyloid oligomerization by a non-coded β-breaker-substituted endomorphin analogue.ACS Chem Biol2011
20088553Slow folding of cross-linked alpha-helical peptides due to steric hindrance.J Phys Chem B2010
20923147Amyloid fibril polymorphism is under kinetic control.J Am Chem Soc2010
20559435Complete phenotypic recovery of an Alzheimer's disease model by a quinone-tryptophan hybrid aggregation inhibitor.PLoS One2010
193097329,10-Anthraquinone hinders beta-aggregation: how does a small molecule interfere with Abeta-peptide amyloid fibrillation?Protein Sci2009
19751679How does a simplified-sequence protein fold?Biophys J2009
19133272Amyloid aggregation on lipid bilayers and its impact on membrane permeability.J Mol Biol2009
18222472Designed armadillo repeat proteins as general peptide-binding scaffolds: consensus design and computational optimization of the hydrophobic core.J Mol Biol2008
18028943Pathways and intermediates of amyloid fibril formation.J Mol Biol2007
16797587Interpreting the aggregation kinetics of amyloid peptides.J Mol Biol2006
16155201Organism complexity anti-correlates with proteomic beta-aggregation propensity.Protein Sci2005
16195556Prediction of aggregation rate and aggregation-prone segments in polypeptide sequences.Protein Sci2005
15169952The role of aromaticity, exposed surface, and dipole moment in determining protein aggregation rates.Protein Sci2004
15548025Membrane localization and flexibility of a lipidated ras peptide studied by molecular dynamics simulations.J Am Chem Soc2004
12786348Slow dynamics of a confined supercooled binary mixture: direct space analysis.Phys Rev E Stat Nonlin Soft Matter Phys2003
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Collaborators

Andrej Sali (CM4AI)
University of California San Francisco
Co-authored papers 21
Charles H Greenberg
University of California San Francisco
Co-authored papers 7
Massimiliano Bonomi
Institut Pasteur, Universite Paris Cite, CNRS UMR 8
Co-authored papers 7
Javier Fernandez-Martinez
The Rockefeller University
Co-authored papers 5
Yi Shi
College of Medicine, Yangzhou University
Co-authored papers 5
Peter Cimermancic
Verily Life Sciences LLC
Co-authored papers 5
Dina Schneidman-Duhovny
The Hebrew University of Jerusalem
Co-authored papers 5
Seung Joong Kim
Korea Advanced Institute of Science and Technology (KAIST)
Co-authored papers 5
Brian T Chait
The Rockefeller University
Co-authored papers 5
Michael P Rout
The Rockefeller University
Co-authored papers 5
Florian Stengel
University of Konstanz Universitatsstrasse 10
Co-authored papers 4
Michael Nilges
Institut Pasteur
Co-authored papers 4
Daniel J Saltzberg
University of California san francisco
Co-authored papers 3
Shruthi Viswanath
National Center for Biological Sciences, Tata Institute of Fundamental Research
Co-authored papers 3
Rosemary Williams
The Rockefeller University
Co-authored papers 3
Jan P Erzberger
UT Southwestern Medical Center
Co-authored papers 3
Ilan E Chemmama
University of California san francisco
Co-authored papers 3
Benjamin Webb
University of California san francisco
Co-authored papers 3
Ignacia Echeverria
University of California san francisco
Co-authored papers 3
Ruedi Aebersold
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 2
Xiaohui Zeng
University of New Hampshire
Co-authored papers 2
Elina Tjioe
University of California san francisco
Co-authored papers 2
Suyang Zhang
Li Ka Shing Institute of Health Sciences, Chinese University of Hong Kong
Co-authored papers 2
Feixia Chu
University of New Hampshire
Co-authored papers 2
Nenad Ban
Institute of Molecular Biology and Biophysics, ETH Zurich
Co-authored papers 2
Junjie Wang
The Rockefeller University
Co-authored papers 2
Tanja Schaefer
Institute for Molecular Biology and Biophysics
Co-authored papers 2
Julia Chamot-Rooke
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Release 1.2