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Author Details

Richard Sandstrom
Altius Institute for Biomedical Sciences
2005
56
37
Nathan Sheffield (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37066421The ENCODE Uniform Analysis Pipelines.bioRxiv2023
37066421The ENCODE Uniform Analysis Pipelines.bioRxiv2023
37503119The ENCODE Uniform Analysis Pipelines.Res Sq2023
37503119The ENCODE Uniform Analysis Pipelines.Res Sq2023
33770495Inaccessible LCG Promoters Act as Safeguards to Restrict T Cell Development to Appropriate Notch Signaling Environments.Stem Cell Reports2021
33770495Inaccessible LCG Promoters Act as Safeguards to Restrict T Cell Development to Appropriate Notch Signaling Environments.Stem Cell Reports2021
32460018Global Regulatory DNA Potentiation by SMARCA4 Propagates to Selective Gene Expression Programs via Domain-Level Remodeling.Cell Rep2020
32460018Global Regulatory DNA Potentiation by SMARCA4 Propagates to Selective Gene Expression Programs via Domain-Level Remodeling.Cell Rep2020
32579918Global Regulatory DNA Potentiation by SMARCA4 Propagates to Selective Gene Expression Programs via Domain-Level Remodeling.Cell Rep2020
32728250Global reference mapping of human transcription factor footprints.Nature2020
32728217Index and biological spectrum of human DNase I hypersensitive sites.Nature2020
32579918Global Regulatory DNA Potentiation by SMARCA4 Propagates to Selective Gene Expression Programs via Domain-Level Remodeling.Cell Rep2020
32728250Global reference mapping of human transcription factor footprints.Nature2020
32728217Index and biological spectrum of human DNase I hypersensitive sites.Nature2020
30760496Integrated Functional Genomic Analysis Enables Annotation of Kidney Genome-Wide Association Study Loci.J Am Soc Nephrol2019
31798605Mapping and Dynamics of Regulatory DNA in Maturing <i>Arabidopsis thaliana</i> Siliques.Front Plant Sci2019
30760496Integrated Functional Genomic Analysis Enables Annotation of Kidney Genome-Wide Association Study Loci.J Am Soc Nephrol2019
30827930Integrated epigenomic profiling reveals endogenous retrovirus reactivation in renal cell carcinoma.EBioMedicine2019
31798605Mapping and Dynamics of Regulatory DNA in Maturing <i>Arabidopsis thaliana</i> Siliques.Front Plant Sci2019
30827930Integrated epigenomic profiling reveals endogenous retrovirus reactivation in renal cell carcinoma.EBioMedicine2019
28279197The birth of a human-specific neural gene by incomplete duplication and gene fusion.Genome Biol2017
28279197The birth of a human-specific neural gene by incomplete duplication and gene fusion.Genome Biol2017
26711113Erratum: Large-scale identification of sequence variants influencing human transcription factor occupancy in vivo.Nat Genet2016
26749308Genome Sequencing of Autism-Affected Families Reveals Disruption of Putative Noncoding Regulatory DNA.Am J Hum Genet2016
27429906Cross-species Analyses Unravel the Complexity of H3K27me3 and H4K20me3 in the Context of Neural Stem Progenitor Cells.Neuroepigenetics2016
26633627Corrigendum: Domains of genome-wide gene expression dysregulation in Down's syndrome.Nature2016
26711113Erratum: Large-scale identification of sequence variants influencing human transcription factor occupancy in vivo.Nat Genet2016
26633627Corrigendum: Domains of genome-wide gene expression dysregulation in Down's syndrome.Nature2016
27429906Cross-species Analyses Unravel the Complexity of H3K27me3 and H4K20me3 in the Context of Neural Stem Progenitor Cells.Neuroepigenetics2016
26749308Genome Sequencing of Autism-Affected Families Reveals Disruption of Putative Noncoding Regulatory DNA.Am J Hum Genet2016
25383537Resolving the complexity of the human genome using single-molecule sequencing.Nature2015
25910208Native elongating transcript sequencing reveals human transcriptional activity at nucleotide resolution.Cell2015
25693563Integrative analysis of 111 reference human epigenomes.Nature2015
25693567Cell-of-origin chromatin organization shapes the mutational landscape of cancer.Nature2015
25765714Genome-wide comparative analysis reveals human-mouse regulatory landscape and evolution.BMC Genomics2015
25383537Resolving the complexity of the human genome using single-molecule sequencing.Nature2015
25972927DNase I hypersensitivity analysis of the mouse brain and retina identifies region-specific regulatory elements.Epigenetics Chromatin2015
26502339Large-scale identification of sequence variants influencing human transcription factor occupancy in vivo.Nat Genet2015
26502339Large-scale identification of sequence variants influencing human transcription factor occupancy in vivo.Nat Genet2015
25910208Native elongating transcript sequencing reveals human transcriptional activity at nucleotide resolution.Cell2015
25972927DNase I hypersensitivity analysis of the mouse brain and retina identifies region-specific regulatory elements.Epigenetics Chromatin2015
25693563Integrative analysis of 111 reference human epigenomes.Nature2015
25693567Cell-of-origin chromatin organization shapes the mutational landscape of cancer.Nature2015
25765714Genome-wide comparative analysis reveals human-mouse regulatory landscape and evolution.BMC Genomics2015
24185839Coupling transcription factor occupancy to nucleosome architecture with DNase-FLASH.Nat Methods2014
25282150A genome-wide map of adeno-associated virus-mediated human gene targeting.Nat Struct Mol Biol2014
25411453Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution.Science2014
25409824A comparative encyclopedia of DNA elements in the mouse genome.Nature2014
25409825Conservation of trans-acting circuitry during mammalian regulatory evolution.Nature2014
24185839Coupling transcription factor occupancy to nucleosome architecture with DNase-FLASH.Nat Methods2014
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Collaborators

John A Stamatoyannopoulos
Altius Institute for Biomedical Sciences
Co-authored papers 45
Robert E Thurman
University of Washington
Co-authored papers 22
Peter J Sabo
University of Washington
Co-authored papers 21
Alex P Reynolds
Altius Institute for Biomedical Sciences
Co-authored papers 17
Rajinder Kaul
Altius Institute for Biomedical Sciences
Co-authored papers 15
Eric Haugen
Altius Institute for Biomedical Sciences
Co-authored papers 15
Shane Neph
Altius Institute for Biomedical Sciences
Co-authored papers 15
Jeff Vierstra
Altius Institute for Biomedical Sciences
Co-authored papers 15
Audra K Johnson
Altius Institute for Biomedical Sciences
Co-authored papers 14
Morgan Diegel
Altius Institute for Biomedical Sciences
Co-authored papers 14
Theresa K Canfield
University of Washington
Co-authored papers 13
Eric Rynes
Altius Institute for Biomedical Sciences
Co-authored papers 12
Fidencio Neri
Altius Institute for Biomedical Sciences
Co-authored papers 12
Kristen Lee
Altius Institute for Biomedical Sciences
Co-authored papers 12
Douglas Dunn
Altius Institute for Biomedical Sciences
Co-authored papers 11
R S Hansen
University of Washington
Co-authored papers 11
Daniel Bates
Altius Institute for Biomedical Sciences
Co-authored papers 9
Hao Wang
Altius Institute for Biomedical Sciences
Co-authored papers 9
Richard Humbert
University of Washington
Co-authored papers 8
Erika Giste
University of Washington
Co-authored papers 8
Molly Weaver
University of Kentucky
Co-authored papers 8
Matthew T Maurano
Institute for Systems Genetics, NYU School of Medicine
Co-authored papers 7
Anthony Shafer
University of Washington
Co-authored papers 7
Andrew B Stergachis
University of Washington School of Medicine
Co-authored papers 7
Evan E Eichler
University of Washington
Co-authored papers 5
Shinny Vong
University of Washington
Co-authored papers 5
Roderic Guig??
Barcelona Institute of Science and Technology
Co-authored papers 5
Thomas R Gingeras
Stanley Institute for Cognitive Genomics
Co-authored papers 5
Michael O Dorschner
University of Washington
Co-authored papers 5
Shamil R Sunyaev
Harvard Medical School
Co-authored papers 5
Release 1.2