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Author Details

Shaun D Jackman
University of British Columbia
2009
41
26
PMIDPaper TitleJournal TitlePublished Year
36109148The western redcedar genome reveals low genetic diversity in a self-compatible conifer.Genome Res2022
32541955A robust benchmark for detection of germline large deletions and insertions.Nat Biotechnol2020
32699374Author Correction: A robust benchmark for detection of germline large deletions and insertions.Nat Biotechnol2020
32449750Complete Mitochondrial Genome of a Gymnosperm, Sitka Spruce (Picea sitchensis), Indicates a Complex Physical Structure.Genome Biol Evol2020
31171622Complete Chloroplast Genome Sequence of a White Spruce (Picea glauca, Genotype WS77111) from Eastern Canada.Microbiol Resour Announc2019
31196920Complete Chloroplast Genome Sequence of an Engelmann Spruce (<i>Picea engelmannii</i>, Genotype Se404-851) from Western Canada.Microbiol Resour Announc2019
31248052The Genome of the Steller Sea Lion (<i>Eumetopias jubatus</i>).Genes (Basel)2019
31004474ORCA: a comprehensive bioinformatics container environment for education and research.Bioinformatics2019
30513700The Genome of the North American Brown Bear or Grizzly: Ursus arctos ssp. horribilis.Genes (Basel)2018
29925315ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers.BMC Bioinformatics2018
30367597Tigmint: correcting assembly errors using linked reads from large molecules.BMC Bioinformatics2018
28232478ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter.Genome Res2017
27632164Assembly of the Complete Sitka Spruce Chloroplast Genome Using 10X Genomics' GemCode Sequencing Data.PLoS One2016
25592595Kleat: cleavage site analysis of transcriptomes.Pac Symp Biocomput2015
26539459Spaced Seed Data Structures for De Novo Assembly.Int J Genomics2015
26399504Konnector v2.0: pseudo-long reads from paired-end sequencing data.BMC Med Genomics2015
26645680Organellar Genomes of White Spruce (Picea glauca): Assembly and Annotation.Genome Biol Evol2015
26209068Sealer: a scalable gap-closing application for finishing draft genomes.BMC Bioinformatics2015
25923767DIDA: Distributed Indexing Dispatched Alignment.PLoS One2015
26020645UniqTag: Content-Derived Unique and Stable Identifiers for Gene Annotation.PLoS One2015
26017574Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism.Plant J2015
25629448On the representation of de Bruijn graphs.J Comput Biol2015
25143290BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters.Bioinformatics2014
23334666The genetic landscape of high-risk neuroblastoma.Nat Genet2013
23870653Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.Gigascience2013
23941359Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies.BMC Genomics2013
23977017Whole genome duplication and enrichment of metal cation transporters revealed by de novo genome sequencing of extremely halotolerant black yeast Hortaea werneckii.PLoS One2013
23698863Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data.Bioinformatics2013
23725015The genome and transcriptome of the pine saprophyte Ophiostoma piceae, and a comparison with the bark beetle-associated pine pathogen Grosmannia clavigera.BMC Genomics2013
23537049Draft genome of the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major forest pest.Genome Biol2013
22072542Concurrent CIC mutations, IDH mutations, and 1p/19q loss distinguish oligodendrogliomas from other cancers.J Pathol2012
22832581Subgroup-specific structural variation across 1,000 medulloblastoma genomes.Nature2012
21923906Updated genome assembly and annotation of Paenibacillus larvae, the agent of American foulbrood disease of honey bees.BMC Genomics2011
21994928Genome sequence of Mycoplasma capricolum subsp. capripneumoniae strain M1601.J Bacteriol2011
21796119Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma.Nature2011
21926179Assemblathon 1: a competitive assessment of de novo short read assembly methods.Genome Res2011
20128932Assembling genomes using short-read sequencing technology.Genome Biol2010
20935650De novo assembly and analysis of RNA-seq data.Nat Methods2010
19251739ABySS: a parallel assembler for short read sequence data.Genome Res2009
19528083De novo transcriptome assembly with ABySS.Bioinformatics2009
19834150ABySS-Explorer: visualizing genome sequence assemblies.IEEE Trans Vis Comput Graph2009
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Collaborators

University of British Columbia
Co-authored papers 22
Co-authored papers 13
Canada British Columbia Cancer Research Centre, University of British Columbia
Co-authored papers 13
Co-authored papers 9
University of British Columbia
Co-authored papers 8
Present address: Dxige Research Inc.
Co-authored papers 6
University of British Columbia
Co-authored papers 5
Co-authored papers 5
Brain Tumour Foundation of Canada
Co-authored papers 5
Canada British Columbia Cancer Research Centre, University of British Columbia
Co-authored papers 4
Co-authored papers 4
National Human Genome Research Institute, National Institutes of Health
Co-authored papers 4
Ontario Institute for Cancer Research
Co-authored papers 4
Johns Hopkins University
Co-authored papers 4
National Human Genome Research Institute, National Institutes of Health
Co-authored papers 4
Co-authored papers 4
Co-authored papers 3
BC Cancer Research Institute
Co-authored papers 3
National Human Genome Research Institute, National Institutes of Health
Co-authored papers 2
National Institute of Standards and Technology
Co-authored papers 2
Baylor College of Medicine Human Genome Sequencing Center
Co-authored papers 2
Chongqing Aier Eye Hospital
Co-authored papers 2
Chengdu First People's Hospital
Co-authored papers 2
Washington University
Co-authored papers 2
University of Texas MD Anderson Cancer Center
Co-authored papers 2
University of Michigan Medical School ann arbor
Co-authored papers 2
Institute for Computational Biomedicine, Weill Cornell Medicine of Cornell University
Co-authored papers 2
University of Cambridge
Co-authored papers 2
Broad Institute
Co-authored papers 2
Charles-Bruneau Cancer Center, Centre Hospitalier Universitaire (CHU) Sainte-Justine
Co-authored papers 2