Author details

Full Name

Dimitris Anastassiou

Affiliation

Columbia University

ORCID

Career Start Year

1995

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
32070995	Characterizing Intra-Tumor Heterogeneity From Somatic Mutations Without Copy-Neutral Assumption.	IEEE/ACM Trans Comput Biol Bioinform	2021
34283835	Single-cell analysis reveals the pan-cancer invasiveness-associated transition of adipose-derived stromal cells into COL11A1-expressing cancer-associated fibroblasts.	PLoS Comput Biol	2021
32108864	2DImpute: imputation in single-cell RNA-seq data from correlations in two dimensions.	Bioinformatics	2020
33057153	Pan-cancer driver copy number alterations identified by joint expression/CNA data analysis.	Sci Rep	2020
30670680	Meta-analysis of expression and methylation signatures indicates a stress-related epigenetic mechanism in multiple neuropsychiatric disorders.	Transl Psychiatry	2019
31433971	The Immune Landscape of Cancer.	Immunity	2019
30682127	A sequential Monte Carlo algorithm for inference of subclonal structure in cancer.	PLoS One	2019
28192213	Comment on "A COL11A1-correlated pan-cancer gene signature of activated fibroblasts for the prioritization of therapeutic targets," Cancer Lett. 2016 Nov 28; 382 (2): 203-214.	Cancer Lett	2017
27992465	Discovering Genome-Wide Tag SNPs Based on the Mutual Information of the Variants.	PLoS One	2016
24868199	A sequential Monte Carlo framework for haplotype inference in CNV/SNP genotype data.	EURASIP J Bioinform Syst Biol	2014
25249324	Breast cancer prognostic biomarker using attractor metagenes and the FGD3-SUSD3 metagene.	Cancer Epidemiol Biomarkers Prev	2014
24764577	JAK2 expression is associated with tumor-infiltrating lymphocytes and improved breast cancer outcomes: implications for evaluating JAK2 inhibitors.	Cancer Immunol Res	2014
23468608	Biomolecular events in cancer revealed by attractor metagenes.	PLoS Comput Biol	2013
24066611	Notch and VEGF pathways play distinct but complementary roles in tumor angiogenesis.	Vasc Cell	2013
24010487	Maximum-parsimony haplotype frequencies inference based on a joint constrained sparse representation of pooled DNA.	BMC Bioinformatics	2013
23596202	Development of a prognostic model for breast cancer survival in an open challenge environment.	Sci Transl Med	2013
22607042	A unified framework for haplotype inference in nuclear families.	Ann Hum Genet	2012
23110720	Fast and accurate haplotype frequency estimation for large haplotype vectors from pooled DNA data.	BMC Genet	2012
22493711	A multi-cancer mesenchymal transition gene expression signature is associated with prolonged time to recurrence in glioblastoma.	PLoS One	2012
22570537	Integrated Analysis Reveals hsa-miR-142 as a Representative of a Lymphocyte-Specific Gene Expression and Methylation Signature.	Cancer Inform	2012
21076979	Conditional meta-analysis stratifying on detailed HLA genotypes identifies a novel type 1 diabetes locus around TCF19 in the MHC.	Hum Genet	2011
22208948	Human cancer cells express Slug-based epithelial-mesenchymal transition gene expression signature obtained in vivo.	BMC Cancer	2011
21457009	Biomarker discovery using statistically significant gene sets.	J Comput Biol	2011
20727218	A haplotype inference algorithm for trios based on deterministic sampling.	BMC Genet	2010
21047417	Multi-cancer computational analysis reveals invasion-associated variant of desmoplastic reaction involving INHBA, THBS2 and COL11A1.	BMC Med Genomics	2010
19297347	Synergy Disequilibrium Plots: graphical visualization of pairwise synergies and redundancies of SNPs with respect to a phenotype.	Bioinformatics	2009
19348651	Inference of regulatory gene interactions from expression data using three-way mutual information.	Ann N Y Acad Sci	2009
18024972	A profile-based deterministic sequential Monte Carlo algorithm for motif discovery.	Bioinformatics	2008
18234101	Identification of gene interactions associated with disease from gene expression data using synergy networks.	BMC Syst Biol	2008
17299419	Computational analysis of the synergy among multiple interacting genes.	Mol Syst Biol	2007
17666762	Bayesian basecalling for DNA sequence analysis using hidden Markov models.	IEEE/ACM Trans Comput Biol Bioinform	2007
16507134	Variable window binding for mutually exclusive alternative splicing.	Genome Biol	2006
16789819	Inference of disease-related molecular logic from systems-based microarray analysis.	PLoS Comput Biol	2006
16873513	Computational inference of the molecular logic for synaptic connectivity in C. elegans.	Bioinformatics	2006
15971229	Phenotype analysis using network motifs derived from changes in regulatory network dynamics.	Proteins	2005
15048826	Data-based model and parameter evaluation in dynamic transcriptional regulatory networks.	Proteins	2004
11159326	Frequency-domain analysis of biomolecular sequences.	Bioinformatics	2000
18289979	Subpixel edge localization and the interpolation of still images.	IEEE Trans Image Process	1995

1 - 38 of 38

Eunjee Lee

Chungnam National University

Career Start Year 2007

Number of shared co-authors 1

Theo A Knijnenburg

Allen Institute for Cell Science

Career Start Year 2006

Number of shared co-authors 20

Jeroen de Ridder

Center for Molecular Medicine, University Medical Center Utrecht

Career Start Year 2006

Number of shared co-authors 0

Matti Nykter

Prostate Cancer Research Center, Tampere University and Tays Cancer Center

Career Start Year 2006

Number of shared co-authors 6

Dongxiao Zhu

Wayne State University

Career Start Year 2005

Number of shared co-authors 0

Xianghong Jasmine Zhou

David Geffen School of Medicine, University of California at Los Angeles

Career Start Year 2004

Number of shared co-authors 1

Adam A Margolin

Icahn School of Medicine

Career Start Year 2004

Number of shared co-authors 9

Florian Markowetz

CRUK Cambridge Institute, University of Cambridge

Career Start Year 2003

Number of shared co-authors 0

Zhandong Liu

Jan and Dan Duncan Neurological Research Institute at Texas Children's Hospital

Career Start Year 2003

Number of shared co-authors 1

Olivier Elemento

Meyer Cancer Center

Career Start Year 2002

Number of shared co-authors 4

Zhaohui S Qin

Emory University

Career Start Year 2002

Number of shared co-authors 0

Mark A van de Wiel

Amsterdam University Medical Centers (Amsterdam UMC)

Career Start Year 2001

Number of shared co-authors 0

Olga G Troyanskaya

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Career Start Year 2001

Number of shared co-authors 0

Chen-Hsiang Yeang

Institute of Statistical Science

Career Start Year 2001

Number of shared co-authors 0

Lodewyk F A Wessels

University Medical Centre Mannheim, University of Heidelberg

Career Start Year 2000

Number of shared co-authors 4

Joshua M Stuart

University of California at Santa Cruz

Career Start Year 2000

Number of shared co-authors 33

Celine Lefebvre

The Scripps Research Institute

Career Start Year 1999

Number of shared co-authors 2

Wei Wang

IBM Thomas J Watson Research Center, University of California Los Angeles, University of North Carolina at Chapel Hill

Career Start Year 1999

Number of shared co-authors 1

Zhongming Zhao

Center for Precision Health, The University of Texas Health Science Center at Houston

Career Start Year 1998

Number of shared co-authors 10

Igor Jurisica

Schroeder Arthritis Institute

Career Start Year 1998

Number of shared co-authors 0

Benedikt Brors

German Cancer Research Center (DKFZ)

Career Start Year 1997

Number of shared co-authors 1

Panayiotis V Benos

University of Florida

Career Start Year 1996

Number of shared co-authors 2

Ron Shamir

Tel Aviv University

Career Start Year 1995

Number of shared co-authors 0

Jill P Mesirov

University of California San Diego

Career Start Year 1992

Number of shared co-authors 3

Robert Gentleman

Center for Computational Biomedicine, Harvard Medical School

Career Start Year 1991

Number of shared co-authors 0

Wing Hung Wong

Stanford University

Career Start Year 1991

Number of shared co-authors 0

Michael F Ochs

The College of New Jersey

Career Start Year 1988

Number of shared co-authors 1

Pablo Tamayo

University of California San Diego

Career Start Year 1988

Number of shared co-authors 4

Yuval Kluger

Yale University School of Medicine

Career Start Year 1984

Number of shared co-authors 0

Rainer Spang

University of Regensburg

Career Start Year 1969

Number of shared co-authors 0

row(s) 1 - 30 of 30

Tai-Hsien Ou Yang

Columbia University

Co-authored papers 7

Lisle E Mose

Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill

Co-authored papers 1

I K Ashok Sivakumar

Institute for Computational Medicine, Johns Hopkins University

Co-authored papers 1

Akinyemi I Ojesina

University of Alabama at Birmingham

Co-authored papers 1

Ken Chen

University of Texas MD Anderson Cancer Center

Co-authored papers 1

Alexander J Lazar

The University of Texas MD Anderson Cancer Center

Co-authored papers 1

Joel S Parker

Lineberger Cancer Center, University of North Carolina

Co-authored papers 1

Nam Sy Vo

Vingroup Big Data Institute

Co-authored papers 1

Aaron M Newman

Stanford University

Co-authored papers 1

Arvind Rao

University of Michigan-Ann Arbor

Co-authored papers 1

Susan Bullman

Fred Hutchinson Cancer Center

Co-authored papers 1

Jianfang Liu

Peking University Third Hospital

Co-authored papers 1

Wanding Zhou

University of Pennsylvania

Co-authored papers 1

Carrie J Shawber

Columbia University

Co-authored papers 1

David L Gibbs

Institute for Systems Biology

Co-authored papers 1

Scott D Brown

BC Cancer Research Institute

Co-authored papers 1

Farshad Farshidfar

Cumming School of Medicine, University of Calgary

Co-authored papers 1

Hai Hu

Chan Soon-Shiong Institute of Molecular Medicine at Windber

Co-authored papers 1

Vesteinn Thorsson

Institute for Systems Biology

Co-authored papers 1

Davide Bedognetti

College of Health and Life Sciences, Hamad Bin Khalifa University, Qatar Foundation

Co-authored papers 1

Denise M Wolf

University of California San Francisco

Co-authored papers 1

James A Eddy

Benaroya Research Institute at Virginia Mason, Institute for Systems Biology, Sage Bionetworks, University of Illinois at Urbana-Champaign

Co-authored papers 1

Toni K Choueiri

Dana-Farber Cancer Institute

Co-authored papers 1

Tathiane M Malta

School of Pharmaceutical Sciences of Ribeirao Preto, University of Sao Paulo

Co-authored papers 1

Reanne Bowlby

Co-authored papers 1

Houtan Noushmehr

Henry Ford Hospital

Co-authored papers 1

Benjamin G Vincent

UNC School of Medicine, The University of North Carolina at Chapel Hill

Co-authored papers 1

Chandra Sekhar Pedamallu

Broad Institute

Co-authored papers 1

Andrew J Gentles

Stanford Center for Biomedical Informatics Research, Stanford University

Co-authored papers 1

Andrea Califano

Columbia University

Co-authored papers 1

1 - 30

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