Author details

Full Name

Sayan Gupta

Affiliation

Lawrence Berkeley National Laboratory

ORCID

Career Start Year

2001

Papers

H Index

Expertise

CM4AI Collaborator

Nevan J Krogan (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36008591	An automated liquid jet for fluorescence dosimetry and microsecond radiolytic labeling of proteins.	Commun Biol	2022
36397479	Route to synchronization in coupled phase oscillators with frequency-dependent coupling: Explosive or continuous?	Phys Rev E	2022
35980391	A Hybrid Structural Method for Investigating Low Molecular Weight Oligomeric Structures of Amyloid Beta.	Chembiochem	2022
32817938	An ultra-potent synthetic nanobody neutralizes SARS-CoV-2 by locking Spike into an inactive conformation.	bioRxiv	2020
31790200	Development of Container Free Sample Exposure for Synchrotron X-ray Footprinting.	Anal Chem	2020
31734194	Comparative ultrafast spectroscopy and structural analysis of OCP1 and OCP2 from Tolypothrix.	Biochim Biophys Acta Bioenerg	2020
33154106	An ultrapotent synthetic nanobody neutralizes SARS-CoV-2 by stabilizing inactive Spike.	Science	2020
30389783	Heterohexamers Formed by CcmK3 and CcmK4 Increase the Complexity of Beta Carboxysome Shells.	Plant Physiol	2019
31320477	Water molecules mediate zinc mobility in the bacterial zinc diffusion channel ZIPB.	J Biol Chem	2019
30979724	X-ray radiolytic labeling reveals the molecular basis of orange carotenoid protein photoprotection and its interactions with fluorescence recovery protein.	J Biol Chem	2019
30484402	Using X-ray Footprinting and Mass Spectrometry to Study the Structure and Function of Membrane Proteins.	Protein Pept Lett	2019
30484401	Recent Advances in X-Ray Hydroxyl Radical Footprinting at the Advanced Light Source Synchrotron.	Protein Pept Lett	2019
29927103	Time-Resolved Hydroxyl Radical Footprinting of RNA with X-Rays.	Curr Protoc Nucleic Acid Chem	2018
30166540	Multidomain architecture of estrogen receptor reveals interfacial cross-talk between its DNA-binding and ligand-binding domains.	Nat Commun	2018
28806874	The Molecular Basis for Binding of an Electron Transfer Protein to a Metal Oxide Surface.	J Am Chem Soc	2017
27016143	Probing the structure of ribosome assembly intermediates in vivo using DMS and hydroxyl radical footprinting.	Methods	2016
27577756	Synchrotron X-ray footprinting as a method to visualize water in proteins.	J Synchrotron Radiat	2016
26833224	Recent Advances and Applications in Synchrotron X-Ray Protein Footprinting for Protein Structure and Dynamics Elucidation.	Protein Pept Lett	2016
26113721	PHOTOSYNTHESIS. A 12 Ã¿ carotenoid translocation in a photoswitch associated with cyanobacterial photoprotection.	Science	2015
26517913	Oxidative footprinting in the study of structure and function of membrane proteins: current state and perspectives.	Biochem Soc Trans	2015
26385969	Local and global structural drivers for the photoactivation of the orange carotenoid protein.	Proc Natl Acad Sci U S A	2015
24365913	Synchrotron X-ray footprinting on tour.	J Synchrotron Radiat	2014
25043033	Visualizing the kinetic power stroke that drives proton-coupled zinc(II) transport.	Nature	2014
24971962	Development of a microsecond X-ray protein footprinting facility at the Advanced Light Source.	J Synchrotron Radiat	2014
24727473	Multiple glycosaminoglycan-binding epitopes of monocyte chemoattractant protein-3/CCL7 enable it to function as a non-oligomerizing chemokine.	J Biol Chem	2014
23378516	A hybrid structural approach to analyze ligand binding by the serotonin type 4 receptor (5-HT4).	Mol Cell Proteomics	2013
22579250	Conformational dynamics of activation for the pentameric complex of dimeric G protein-coupled receptor and heterotrimeric G protein.	Structure	2012
22927377	Structure and dynamics of protein waters revealed by radiolysis and mass spectrometry.	Proc Natl Acad Sci U S A	2012
21142182	A combined global and local approach to elucidate spatial organization of the Mycobacterial ParB-parS partition assembly.	Biochemistry	2011
20047303	Visualizing water molecules in transmembrane proteins using radiolytic labeling methods.	Biochemistry	2010
20637420	Conformational changes during the gating of a potassium channel revealed by structural mass spectrometry.	Structure	2010
19706523	Structural waters define a functional channel mediating activation of the GPCR, rhodopsin.	Proc Natl Acad Sci U S A	2009
18315323	Installation and testing of a focusing mirror at beamline X28C for high flux x-ray radiolysis of biological macromolecules.	Rev Sci Instrum	2008
18953727	Inhibition of bacterial oxidases by formamide and analogs.	Biol Chem	2008
17435298	The Beamline X28C of the Center for Synchrotron Biosciences: a national resource for biomolecular structure and dynamics experiments using synchrotron footprinting.	J Synchrotron Radiat	2007
17683121	DNA and protein footprinting analysis of the modulation of DNA binding by the N-terminal domain of the Saccharomyces cerevisiae TATA binding protein.	Biochemistry	2007
15364572	Monovalent ion-mediated folding of the Tetrahymena thermophila ribozyme.	J Mol Biol	2004
15220401	DNA binding provides a molecular strap activating the adenovirus proteinase.	Mol Cell Proteomics	2004
11500038	Direct observation of release of cytochrome c from lipid-encapsulated protein by peroxide and superoxide: a possible mechanism for drug-induced apoptosis.	Biochem Biophys Res Commun	2001
11352755	pH-induced conformational transition in the soluble CuA domain of Paracoccus denitrificans cytochrome oxidase.	Biochemistry	2001

1 - 40 of 40

Iris D Young

University of California san francisco

Career Start Year 2016

Number of shared co-authors 32

Seung Joong Kim

Korea Advanced Institute of Science and Technology (KAIST)

Career Start Year 2006

Number of shared co-authors 2

James S Fraser

University of California san francisco

Career Start Year 2006

Number of shared co-authors 32

Andrew E Whitten

Institute for Molecular Bioscience, University of Queensland

Career Start Year 2004

Number of shared co-authors 0

Tsutomu Matsui

Stanford University

Career Start Year 2003

Number of shared co-authors 3

Sebastian Hiller

University of Basel

Career Start Year 2003

Number of shared co-authors 0

Ivaylo Ivanov

Georgia State University, GA 30302 USA Center for Diagnostics and Therapeutics

Career Start Year 2002

Number of shared co-authors 1

Greg L Hura

Lawrence Berkeley National Laboratory, University of California Santa Cruz

Career Start Year 2002

Number of shared co-authors 0

Henry van den Bedem

University of California San Francisco

Career Start Year 2002

Number of shared co-authors 1

Anthony P Duff

Bragg Institute

Career Start Year 2000

Number of shared co-authors 0

Mark J S Kelly

Department of Pharmaceutical Chemistry, University of California San Francisco

Career Start Year 2000

Number of shared co-authors 3

James M Holton

Lawrence Berkeley National Laboratory

Career Start Year 1997

Number of shared co-authors 6

Orly Dym

Weizmann Institute of Science

Career Start Year 1995

Number of shared co-authors 1

Tobin R Sosnick

Institute for Biophysical Dynamics, The University of Chicago

Career Start Year 1990

Number of shared co-authors 0

Petra Fromme

Biodesign Center for Applied Structural Discovery, Arizona State University

Career Start Year 1988

Number of shared co-authors 0

John F Hunt

Columbia University

Career Start Year 1986

Number of shared co-authors 1

Lu-Yun Lian

Institute of Systems, The University of Liverpool

Career Start Year 1984

Number of shared co-authors 0

Thomas Earnest

Washington University School of Medicine in St. Louis

Career Start Year 1982

Number of shared co-authors 1

Mike P Williamson

The University of Sheffield

Career Start Year 1982

Number of shared co-authors 0

Walter J Chazin

and Center for Structural Biology, Vanderbilt University

Career Start Year 1982

Number of shared co-authors 0

Michal Hammel

Lawrence Berkeley National Laboratory

Career Start Year 1981

Number of shared co-authors 1

Dmitri I Svergun

King's College London BHF Centre for Research Excellence

Career Start Year 1980

Number of shared co-authors 0

Rolf Boelens

Utrecht University

Career Start Year 1979

Number of shared co-authors 0

David A Agard

University of California, USA Quantitative Biosciences Institute (QBI) san francisco

Career Start Year 1977

Number of shared co-authors 33

David A Case

Rutgers University

Career Start Year 1977

Number of shared co-authors 0

John A Tainer

The University of Texas MD Anderson Cancer Center

Career Start Year 1975

Number of shared co-authors 2

Charles L Brooks

University of Michigan ann arbor

Career Start Year 1974

Number of shared co-authors 0

George N Phillips

Rice University

Career Start Year 1974

Number of shared co-authors 0

Kevin H Gardner

CUNY Advanced Science Research Center

Career Start Year 1971

Number of shared co-authors 0

Wayne A Hendrickson

Columbia University

Career Start Year 1968

Number of shared co-authors 1

row(s) 1 - 30 of 30

Corie Y Ralston

Lawrence Berkeley National Laboratory

Co-authored papers 20

Mark R Chance

Case Western Reserve University

Co-authored papers 19

Christopher J Petzold

Joint BioEnergy Institute

Co-authored papers 12

Janna Kiselar

Co-authored papers 3

Michael Brenowitz

Albert Einstein College of Medicine

Co-authored papers 2

Un Seng Chio

University of California san francisco

Co-authored papers 2

Aditya A Anand

University of California san francisco

Co-authored papers 2

Camille R Simoneau

Gladstone Institute of Virology

Co-authored papers 2

Cynthia M Chio

University of California san francisco

Co-authored papers 2

Meghna Gupta

University of California san francisco

Co-authored papers 2

Huong T Kratochvil

Department of Pharmaceutical Chemistry, University of California-San Francisco

Co-authored papers 2

Peter Walter

University of California san francisco

Co-authored papers 2

Amber M Smith

University of California san francisco

Co-authored papers 2

Axel F Brilot

University of California san francisco

Co-authored papers 2

Smriti Sangwan

Howard Hughes Medical Institute, University of California los angeles

Co-authored papers 2

Kris M White

Quantitative Biosciences Institute (QBI) Coronavirus Research Group (QCRG)

Co-authored papers 2

Marco Vignuzzi

Quantitative Biosciences Institute (QBI) Coronavirus Research Group (QCRG)

Co-authored papers 2

Cristina Puchades

University of California San Francisco (UCSF) School of Medicine

Co-authored papers 2

Michael Schoof

Howard Hughes Medical Institute, University of California at San Francisco

Co-authored papers 2

Caleigh M Azumaya

Fred Hutchinson Cancer Center

Co-authored papers 2

Christian B Billesb??lle

Department of Pharmaceutical Chemistry, University of California san francisco

Co-authored papers 2

Henry C Nguyen

Shanghai Clinical Research and Trial Center

Co-authored papers 2

Ishan Deshpande

Department of Pharmaceutical Chemistry, University of California san francisco

Co-authored papers 2

Silke Nock

Howard Hughes Medical Institute, University of California at San Francisco

Co-authored papers 2

Nevan J Krogan (CM4AI)

University of California San Francisco

Co-authored papers 2

Morgane Boone

Center for Medical Biotechnology

Co-authored papers 2

Niv Dobzinski

Howard Hughes Medical Institute, University of California at San Francisco

Co-authored papers 2

Reuben A Saunders

University of California San Francisco

Co-authored papers 2

Aashish Manglik

Department of Pharmaceutical Chemistry, University of California San Francisco

Co-authored papers 2

Gregory E Merz

University of California san francisco

Co-authored papers 2

1 - 30

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