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Author Details

Marina Bibikova
Departments of Bioinformatics and Clinical Genomics, Illumina Inc.
1998
75
43
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
26902887DNA methylation profiles in African American prostate cancer patients in relation to disease progression.Genomics2019
30304370Pisces: an accurate and versatile variant caller for somatic and germline next-generation sequencing data.Bioinformatics2019
26902887DNA methylation profiles in African American prostate cancer patients in relation to disease progression.Genomics2019
30304370Pisces: an accurate and versatile variant caller for somatic and germline next-generation sequencing data.Bioinformatics2019
29635542Targeted methylation sequencing of plasma cell-free DNA for cancer detection and classification.Ann Oncol2018
29635542Targeted methylation sequencing of plasma cell-free DNA for cancer detection and classification.Ann Oncol2018
27358489Epigenome-Wide Tumor DNA Methylation Profiling Identifies Novel Prognostic Biomarkers of Metastatic-Lethal Progression in Men Diagnosed with Clinically Localized Prostate Cancer.Clin Cancer Res2017
28496006Gene expression signature of Gleason score is associated with prostate cancer outcomes in a radical prostatectomy cohort.Oncotarget2017
29137428<i>PTEN</i> loss is associated with prostate cancer recurrence and alterations in tumor DNA methylation profiles.Oncotarget2017
27358489Epigenome-Wide Tumor DNA Methylation Profiling Identifies Novel Prognostic Biomarkers of Metastatic-Lethal Progression in Men Diagnosed with Clinically Localized Prostate Cancer.Clin Cancer Res2017
28145099Gene expression panel predicts metastatic-lethal prostate cancer outcomes in men diagnosed with clinically localized prostate cancer.Mol Oncol2017
28496006Gene expression signature of Gleason score is associated with prostate cancer outcomes in a radical prostatectomy cohort.Oncotarget2017
28145099Gene expression panel predicts metastatic-lethal prostate cancer outcomes in men diagnosed with clinically localized prostate cancer.Mol Oncol2017
29137428<i>PTEN</i> loss is associated with prostate cancer recurrence and alterations in tumor DNA methylation profiles.Oncotarget2017
27142338Prostate tumor DNA methylation is associated with cigarette smoking and adverse prostate cancer outcomes.Cancer2016
27142338Prostate tumor DNA methylation is associated with cigarette smoking and adverse prostate cancer outcomes.Cancer2016
26612861Substantial DNA methylation differences between two major neuronal subtypes in human brain.Nucleic Acids Res2016
27651837Epigenetic signature of Gleason score and prostate cancer recurrence after radical prostatectomy.Clin Epigenetics2016
26612861Substantial DNA methylation differences between two major neuronal subtypes in human brain.Nucleic Acids Res2016
27651837Epigenetic signature of Gleason score and prostate cancer recurrence after radical prostatectomy.Clin Epigenetics2016
25916844TP53 mutations, tetraploidy and homologous recombination repair defects in early stage high-grade serous ovarian cancer.Nucleic Acids Res2015
25916844TP53 mutations, tetraploidy and homologous recombination repair defects in early stage high-grade serous ovarian cancer.Nucleic Acids Res2015
26305677Targeted or whole genome sequencing of formalin fixed tissue samples: potential applications in cancer genomics.Oncotarget2015
26383847Epigenomic profiling of DNA methylation in paired prostate cancer versus adjacent benign tissue.Prostate2015
26067621DNA methylation fingerprint of neuroblastoma reveals new biological and clinical insights.Epigenomics2015
26692910Epigenomic profiling of prostate cancer identifies differentially methylated genes in TMPRSS2:ERG fusion-positive versus fusion-negative tumors.Clin Epigenetics2015
26305677Targeted or whole genome sequencing of formalin fixed tissue samples: potential applications in cancer genomics.Oncotarget2015
26383847Epigenomic profiling of DNA methylation in paired prostate cancer versus adjacent benign tissue.Prostate2015
26692910Epigenomic profiling of prostate cancer identifies differentially methylated genes in TMPRSS2:ERG fusion-positive versus fusion-negative tumors.Clin Epigenetics2015
26067621DNA methylation fingerprint of neuroblastoma reveals new biological and clinical insights.Epigenomics2015
24057217Differences in DNA methylation between human neuronal and glial cells are concentrated in enhancers and non-CpG sites.Nucleic Acids Res2014
24057217Differences in DNA methylation between human neuronal and glial cells are concentrated in enhancers and non-CpG sites.Nucleic Acids Res2014
24504028Clinical characteristics of ovarian cancer classified by BRCA1, BRCA2, and RAD51C status.Sci Rep2014
24728075Tumor hypomethylation at 6p21.3 associates with longer time to recurrence of high-grade serous epithelial ovarian cancer.Cancer Res2014
24718283Validation study of genes with hypermethylated promoter regions associated with prostate cancer recurrence.Cancer Epidemiol Biomarkers Prev2014
25179373Application of a low cost array-based technique - TAB-Array - for quantifying and mapping both 5mC and 5hmC at single base resolution in human pluripotent stem cells.Genomics2014
25179373Application of a low cost array-based technique - TAB-Array - for quantifying and mapping both 5mC and 5hmC at single base resolution in human pluripotent stem cells.Genomics2014
24504028Clinical characteristics of ovarian cancer classified by BRCA1, BRCA2, and RAD51C status.Sci Rep2014
24718283Validation study of genes with hypermethylated promoter regions associated with prostate cancer recurrence.Cancer Epidemiol Biomarkers Prev2014
24728075Tumor hypomethylation at 6p21.3 associates with longer time to recurrence of high-grade serous epithelial ovarian cancer.Cancer Res2014
23177740Genome-wide methylation profiles reveal quantitative views of human aging rates.Mol Cell2013
24154874APOBEC3B upregulation and genomic mutation patterns in serous ovarian carcinoma.Cancer Res2013
23177740Genome-wide methylation profiles reveal quantitative views of human aging rates.Mol Cell2013
23550148Succinate dehydrogenase mutation underlies global epigenomic divergence in gastrointestinal stromal tumor.Cancer Discov2013
23509297Whole-genome haplotyping by dilution, amplification, and sequencing.Proc Natl Acad Sci U S A2013
23571109Epigenome-wide ovarian cancer analysis identifies a methylation profile differentiating clear-cell histology with epigenetic silencing of the HERG K+ channel.Hum Mol Genet2013
24511466A panel of CpG methylation sites distinguishes human embryonic stem cells and induced pluripotent stem cells.Stem Cell Reports2013
24511466A panel of CpG methylation sites distinguishes human embryonic stem cells and induced pluripotent stem cells.Stem Cell Reports2013
24154874APOBEC3B upregulation and genomic mutation patterns in serous ovarian carcinoma.Cancer Res2013
23509297Whole-genome haplotyping by dilution, amplification, and sequencing.Proc Natl Acad Sci U S A2013
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Collaborators

Nanfang Hospital and Basic Medical College, Southern Medical University
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Co-authored papers 20
Fred Hutchinson Cancer Research Center
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National Cancer Institute
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Illumina Inc.
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Mayo Clinic College of Medicine
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Medical Research Council Laboratory of Molecular Biology
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Center for Individualized Medicine, Mayo Clinic
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David Geffen School of Medicine at University of California Los Angeles
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Fred Hutchinson Cancer Center
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Mayo Clinic
Co-authored papers 3
Center for Cancer Research, National Cancer Institute, National Institutes of Health
Co-authored papers 3
H. Lee Moffitt Cancer Center and Research Institute
Co-authored papers 3
Suburban Hospital Department of Pathology
Co-authored papers 3
University of Utah Medical Center
Co-authored papers 3
From Foundation Medicine
Co-authored papers 3
Illumina Inc.
Co-authored papers 3
Illumina Cambridge Ltd.
Co-authored papers 3
Washington State University Elson S. Floyd College of Medicine
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Mayo Clinic
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Eastern Virginia Medical School
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Center for Cancer Research, National Cancer Institute, National Institutes of Health
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