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Author Details

Duncan MacCannell
Centers for Disease Control and Prevention
2006
44
28
PMIDPaper TitleJournal TitlePublished Year
36730050Spike Gene Target Amplification in a Diagnostic Assay as a Marker for Public Health Monitoring of Emerging SARS-CoV-2 Variants - United States, November 2021-January 2023.MMWR Morb Mortal Wkly Rep2023
35686436Early Detection of Severe Acute Respiratory Syndrome Coronavirus 2 Variants Using Traveler-based Genomic Surveillance at 4 US Airports, September 2021-January 2022.Clin Infect Dis2023
37319011Genomic Surveillance for SARS-CoV-2 Variants: Circulation of Omicron Lineages - United States, January 2022-May 2023.MMWR Morb Mortal Wkly Rep2023
35169842Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package.Gigascience2022
35411350Wastewater sequencing uncovers early, cryptic SARS-CoV-2 variant transmission.medRxiv2022
35798029Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission.Nature2022
35143464Genomic Surveillance for SARS-CoV-2 Variants: Predominance of the Delta (B.1.617.2) and Omicron (B.1.1.529) Variants - United States, June 2021-January 2022.MMWR Morb Mortal Wkly Rep2022
33476315Emergence of SARS-CoV-2 B.1.1.7 Lineage - United States, December 29, 2020-January 12, 2021.MMWR Morb Mortal Wkly Rep2021
33649511Want to track pandemic variants faster? Fix the bioinformatics bottleneck.Nature2021
33891875Early introductions and transmission of SARS-CoV-2 variant B.1.1.7 in the United States.Cell2021
33861950Emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States.Cell2021
34805437SARS-CoV-2 Genomic Surveillance Reveals Little Spread From a Large University Campus to the Surrounding Community.Open Forum Infect Dis2021
34138695Transmission Dynamics of Severe Acute Respiratory Syndrome Coronavirus 2 in High-Density Settings, Minnesota, USA, March-June 2020.Emerg Infect Dis2021
34111060Genomic Surveillance for SARS-CoV-2 Variants Circulating in the United States, December 2020-May 2021.MMWR Morb Mortal Wkly Rep2021
34108654SARS-CoV-2 Variants of Interest and Concern naming scheme conducive for global discourse.Nat Microbiol2021
32513865Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California.Science2020
32768390STROBE-metagenomics: a STROBE extension statement to guide the reporting of metagenomics studies.Lancet Infect Dis2020
32528156Ten recommendations for supporting open pathogen genomic analysis in public health.Nat Med2020
30763433Next-Generation Sequencing of Infectious Pathogens.JAMA2019
31881145Pathogen Genomics in Public Health.N Engl J Med2019
30737915Platforms and Analytical Tools Used in Nucleic Acid Sequence-Based Microbial Genotyping Procedures.Microbiol Spectr2019
28031438Integrating Advanced Molecular Technologies into Public Health.J Clin Microbiol2017
28362935Evolution and Transmission of Carbapenem-Resistant Klebsiella pneumoniae Expressing the blaOXA-232 Gene During an Institutional Outbreak Associated With Endoscopic Retrograde Cholangiopancreatography.Clin Infect Dis2017
25679978Development and validation of an internationally-standardized, high-resolution capillary gel-based electrophoresis PCR-ribotyping protocol for Clostridium difficile.PLoS One2015
26132731Canonical Single Nucleotide Polymorphisms (SNPs) for High-Resolution Subtyping of Shiga-Toxin Producing Escherichia coli (STEC) O157:H7.PLoS One2015
26154004Good laboratory practice for clinical next-generation sequencing informatics pipelines.Nat Biotechnol2015
26196384Genomic Analysis of the Emergence and Rapid Global Dissemination of the Clonal Group 258 Klebsiella pneumoniae Pandemic.PLoS One2015
25887617Chlamydia psittaci comparative genomics reveals intraspecies variations in the putative outer membrane and type III secretion system genes.Microbiology (Reading)2015
24631223Strengthening the Reporting of Molecular Epidemiology for Infectious Diseases (STROME-ID): an extension of the STROBE statement.Lancet Infect Dis2014
25291580New Delhi metallo-β-lactamase-producing carbapenem-resistant Escherichia coli associated with exposure to duodenoscopes.JAMA2014
25103754Genome Sequences of 228 Shiga Toxin-Producing Escherichia coli Isolates and 12 Isolates Representing Other Diarrheagenic E. coli Pathotypes.Genome Announc2014
24951807Whole-genome analysis of Exserohilum rostratum from an outbreak of fungal meningitis and other infections.J Clin Microbiol2014
24602944Carbapenem-resistant Klebsiella pneumoniae producing New Delhi metallo-β-lactamase at an acute care hospital, Colorado, 2012.Infect Control Hosp Epidemiol2014
23175261Development and evaluation of a novel, semiautomated Clostridium difficile typing platform.J Clin Microbiol2013
23917910Prevalence and risk factors associated with vancomycin-resistant Staphylococcus aureus precursor organism colonization among patients with chronic lower-extremity wounds in Southeastern Michigan.Infect Control Hosp Epidemiol2013
23931842Bacterial strain typing.Clin Lab Med2013
23704182Genome Sequence of Salmonella enterica Serotype Tennessee Strain CDC07-0191, Implicated in the 2006-2007 Multistate Food-Borne Outbreak Linked to Peanut Butter in the United States.Genome Announc2013
23780507Epidemiology of community-associated Clostridium difficile infection, 2009 through 2011.JAMA Intern Med2013
23516195Draft genome sequences of Bordetella holmesii strains from blood (F627) and nasopharynx (H558).Genome Announc2013
22377231Community-associated Clostridium difficile infections, Monroe County, New York, USA.Emerg Infect Dis2012
22986214Development of a consensus method for culture of Clostridium difficile from meat and its use in a survey of U.S. retail meats.Food Microbiol2012
19183143Proton pump inhibitors increase significantly the risk of Clostridium difficile infection in a low-endemicity, non-outbreak hospital setting.Aliment Pharmacol Ther2009
18573937Clostridium difficile infections in a Canadian tertiary care hospital before and during a regional epidemic associated with the BI/NAP1/027 strain.Antimicrob Agents Chemother2008
16757612Molecular analysis of Clostridium difficile PCR ribotype 027 isolates from Eastern and Western Canada.J Clin Microbiol2006
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Co-authored papers 4
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Co-authored papers 4
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Co-authored papers 3
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Duke University
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Rollins School of Public Health, Emory University
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University of Arizona Medical Center
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The Rockefeller University
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California Institute of Technology
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Co-authored papers 2
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Co-authored papers 2
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University of California, Davis Center for Valley Fever
Co-authored papers 2
Imperial College London Diabetes Centre
Co-authored papers 2
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