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Author Details

C??dric Feschotte
Cornell University
2000
116
54
PMIDPaper TitleJournal TitlePublished Year
36217030A comprehensive SARS-CoV-2-human protein-protein interactome reveals COVID-19 pathobiology and potential host therapeutic targets.Nat Biotechnol2023
37714714Transposable elements drive the evolution of metazoan zinc finger genes.Genome Res2023
36947073Transposable Element Interactions Shape the Ecology of the Deer Mouse Genome.Mol Biol Evol2023
37293002Massive invasion of organellar DNA drives nuclear genome evolution in <i>Toxoplasma</i>.bioRxiv2023
36798413PNMA2 forms non-enveloped virus-like capsids that trigger paraneoplastic neurological syndrome.bioRxiv2023
34987056Zebrafish transposable elements show extensive diversification in age, genomic distribution, and developmental expression.Genome Res2022
35677070A comprehensive SARS-CoV-2-human protein-protein interactome network identifies pathobiology and host-targeting therapies for COVID-19.Res Sq2022
36440631Transposon control as a checkpoint for tissue regeneration.Development2022
36302021Evolution and antiviral activity of a human protein of retroviral origin.Science2022
35158099Single-Cell Analysis Reveals Unexpected Cellular Changes and Transposon Expression Signatures in the Colonic Epithelium of Treatment-Naïve Adult Crohn's Disease Patients.Cell Mol Gastroenterol Hepatol2022
35179489Mosaic cis-regulatory evolution drives transcriptional partitioning of HERVH endogenous retrovirus in the human embryo.Elife2022
35228718Roles of transposable elements in the regulation of mammalian transcription.Nat Rev Mol Cell Biol2022
34187518Evolution of mouse circadian enhancers from transposable elements.Genome Biol2021
33602827Recurrent evolution of vertebrate transcription factors by transposase capture.Science2021
34731091SARS-CoV-2 infection mediates differential expression of human endogenous retroviruses and long interspersed nuclear elements.JCI Insight2021
32511375A single-cell RNA expression map of human coronavirus entry factors.bioRxiv2020
32075552Contribution of unfixed transposable element insertions to human regulatory variation.Philos Trans R Soc Lond B Biol Sci2020
32067044TypeTE: a tool to genotype mobile element insertions from whole genome resequencing data.Nucleic Acids Res2020
33202765Human Endogenous Retrovirus K Rec forms a Regulatory Loop with MITF that Opposes the Progression of Melanoma to an Invasive Stage.Viruses2020
32946807A Single-Cell RNA Expression Map of Human Coronavirus Entry Factors.Cell Rep2020
32714119A Single-Cell RNA Expression Map of Human Coronavirus Entry Factors.SSRN2020
32955944A Field Guide to Eukaryotic Transposable Elements.Annu Rev Genet2020
32951558Correction to 'Contribution of unfixed transposable element insertions to human regulatory variation'.Philos Trans R Soc Lond B Biol Sci2020
32300014RepeatModeler2 for automated genomic discovery of transposable element families.Proc Natl Acad Sci U S A2020
30808657RNAi-dependent <i>Polycomb</i> repression controls transposable elements in <i>Tetrahymena</i>.Genes Dev2019
31481535Host-transposon interactions: conflict, cooperation, and cooption.Genes Dev2019
29328916The Neuronal Gene Arc Encodes a Repurposed Retrotransposon Gag Protein that Mediates Intercellular RNA Transfer.Cell2018
30256192Transposons take remote control.Elife2018
30454069Ten things you should know about transposable elements.Genome Biol2018
30568734Variation in proviral content among human genomes mediated by LTR recombination.Mob DNA2018
30541598Analysis of 3D genomic interactions identifies candidate host genes that transposable elements potentially regulate.Genome Biol2018
29570995The Neuronal Gene Arc Encodes a Repurposed Retrotransposon Gag Protein that Mediates Intercellular RNA Transfer.Cell2018
29505963Horizontal acquisition of transposable elements and viral sequences: patterns and consequences.Curr Opin Genet Dev2018
27867194Regulatory activities of transposable elements: from conflicts to benefits.Nat Rev Genet2017
28199335Ecological networks to unravel the routes to horizontal transposon transfers.PLoS Biol2017
28179571Dynamics of genome size evolution in birds and mammals.Proc Natl Acad Sci U S A2017
28508897Whole genome analysis of a schistosomiasis-transmitting freshwater snail.Nat Commun2017
28832025Corrigendum: Whole genome analysis of a schistosomiasis-transmitting freshwater snail.Nat Commun2017
28844698Transposable Element Domestication As an Adaptation to Evolutionary Conflicts.Trends Genet2017
28818736Co-option of endogenous viral sequences for host cell function.Curr Opin Virol2017
26941318Regulatory evolution of innate immunity through co-option of endogenous retroviruses.Science2016
33065895Endogenous viral elements: evolution and impact.Virologie (Montrouge)2016
27892853Structure of the germline genome of <i>Tetrahymena thermophila</i> and relationship to the massively rearranged somatic genome.Elife2016
27164953Exploration of the Drosophila buzzatii transposable element content suggests underestimation of repeats in Drosophila genomes.BMC Genomics2016
25640180Ancient transposable elements transformed the uterine regulatory landscape and transcriptome during the evolution of mammalian pregnancy.Cell Rep2015
30211914First international workshop on human endogenous retroviruses and diseases, HERVs &amp; disease 2015.Mob DNA2015
26406119Genomic DNA transposition induced by human PGBD5.Elife2015
26244060A call for benchmarking transposable element annotation methods.Mob DNA2015
26562410Cross-Species Transmission and Differential Fate of an Endogenous Retrovirus in Three Mammal Lineages.PLoS Pathog2015
26067596DNA transposons have colonized the genome of the giant virus Pandoravirus salinus.BMC Biol2015
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Collaborators

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University of Texas at Arlington
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Guillaume Bourque
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Peter W Atkinson
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The Ohio State University
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Richard Cordaux
Universite de Poitiers, UMR CNRS 7267
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Vikas Bansal
University of California San Diego
Co-authored papers 2
Robert Hubley
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Nels C Elde
University of Utah School of Medicine
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Haiyuan Yu
Weill Institute for Cell and Molecular Biology, Cornell University
Co-authored papers 2
Jonathan P Rast
Emory University
Co-authored papers 2
Monica C Munoz-Torres
University of Colorado Anschutz Medical Campus
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Arian F A Smit
Co-authored papers 2
Vishvanath Nene
International Livestock Research Institute (ILRI)
Co-authored papers 1
Peter Uetz
Center for the Study of Biological Complexity, Virginia Commonwealth University
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Release 1.2