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Author Details

Cory C Funk
Institute for Systems Biology
1999
47
21
PMIDPaper TitleJournal TitlePublished Year
37507199Novel TCF4:TCF12 heterodimer inhibits glioblastoma growth.Mol Oncol2024
35997888A metabolomic signature of the APOE2 allele.Geroscience2023
38076912Aβ Amyloid Scaffolds the Accumulation of Matrisome and Additional Proteins in Alzheimer's Disease.bioRxiv2023
34813500Alzheimer's disease and progressive supranuclear palsy share similar transcriptomic changes in distinct brain regions.J Clin Invest2022
35733645Dense data enables 21st century clinical trials.Alzheimers Dement (N Y)2022
35484176Risk factors for severe COVID-19 differ by age for hospitalized adults.Sci Rep2022
35910672The Coaching for Cognition in Alzheimer's (COCOA) trial: Study design.Alzheimers Dement (N Y)2022
35897046Deletion of Abi3/Gngt2 influences age-progressive amyloid β and tau pathologies in distinctive ways.Alzheimers Res Ther2022
33480174Integrative functional genomic analysis of intron retention in human and mouse brain with Alzheimer's disease.Alzheimers Dement2021
35237464Case Study: A Precision Medicine Approach to Multifactorial Dementia and Alzheimer's Disease.J Alzheimers Dis Parkinsonism2021
34352486Systems modeling of metabolic dysregulation in neurodegenerative diseases.Curr Opin Pharmacol2021
34127518Microglia show differential transcriptomic response to Aβ peptide aggregates ex vivo and in vivo.Life Sci Alliance2021
34295960A systems-biology clinical trial of a personalized multimodal lifestyle intervention for early Alzheimer's disease.Alzheimers Dement (N Y)2021
33957936Modulating innate immune activation states impacts the efficacy of specific Aβ immunotherapy.Mol Neurodegener2021
33972690The viral hypothesis: how herpesviruses may contribute to Alzheimer's disease.Mol Psychiatry2021
33420340Partial inhibition of mitochondrial complex I ameliorates Alzheimer's disease pathology and cognition in APP/PS1 female mice.Commun Biol2021
32668255Meta-Analysis of the Alzheimer's Disease Human Brain Transcriptome and Functional Dissection in Mouse Models.Cell Rep2020
32028886iREAD: a tool for intron retention detection from RNA-seq data.BMC Genomics2020
32814038Atlas of Transcription Factor Binding Sites from ENCODE DNase Hypersensitivity Data across 27 Tissue Types.Cell Rep2020
30772379Genome-Scale Transcriptional Regulatory Network Models of Psychiatric and Neurodegenerative Disorders.Cell Syst2019
29107053Conserved brain myelination networks are altered in Alzheimer's and other neurodegenerative diseases.Alzheimers Dement2018
30158114TLR5 decoy receptor as a novel anti-amyloid therapeutic for Alzheimer's disease.J Exp Med2018
29937276Multiscale Analysis of Independent Alzheimer's Cohorts Finds Disruption of Molecular, Genetic, and Clinical Networks by Human Herpesvirus.Neuron2018
30195075Motor neuron loss and neuroinflammation in a model of α-synuclein-induced neurodegeneration.Neurobiol Dis2018
30136084Divergent brain gene expression patterns associate with distinct cell-specific tau neuropathology traits in progressive supranuclear palsy.Acta Neuropathol2018
29754406Targeting TWIST1 through loss of function inhibits tumorigenicity of human glioblastoma.Mol Oncol2018
28714976Rare coding variants in PLCG2, ABI3, and TREM2 implicate microglial-mediated innate immunity in Alzheimer's disease.Nat Genet2017
28365151A Cell-Surface Membrane Protein Signature for Glioblastoma.Cell Syst2017
28350386Corrigendum: Motivational, proteostatic and transcriptional deficits precede synapse loss, gliosis and neurodegeneration in the B6.Htt<sup>Q111/+</sup> model of Huntington's disease.Sci Rep2017
28264064Ion channel expression patterns in glioblastoma stem cells with functional and therapeutic implications for malignancy.PLoS One2017
28176805Motivational, proteostatic and transcriptional deficits precede synapse loss, gliosis and neurodegeneration in the B6.Htt<sup>Q111/+</sup> model of Huntington's disease.Sci Rep2017
27727239Human whole genome genotype and transcriptome data for Alzheimer's and other neurodegenerative diseases.Sci Data2016
25619653IL-10 alters immunoproteostasis in APP mice, increasing plaque burden and worsening cognitive behavior.Neuron2015
29270443SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis.IEEE Life Sci Lett2015
26588779Isoforms of RNA-Editing Enzyme ADAR1 Independently Control Nucleic Acid Sensor MDA5-Driven Autoimmunity and Multi-organ Development.Immunity2015
26013981Fostering synergy between cell biology and systems biology.Trends Cell Biol2015
24650217Detection of 1α,25-dihydroxyvitamin D-regulated miRNAs in zebrafish by whole transcriptome sequencing.Zebrafish2014
24997998Quantitative proteomic analysis reveals effects of epidermal growth factor receptor (EGFR) on invasion-promoting proteins secreted by glioblastoma cells.Mol Cell Proteomics2014
23496976AUREA: an open-source software system for accurate and user-friendly identification of relative expression molecular signatures.BMC Bioinformatics2013
24146911Transcriptional analysis of aggressiveness and heterogeneity across grades of astrocytomas.PLoS One2013
23935471Multi-study integration of brain cancer transcriptomes reveals organ-level molecular signatures.PLoS Comput Biol2013
22734042Research resource: whole transcriptome RNA sequencing detects multiple 1α,25-dihydroxyvitamin D(3)-sensitive metabolic pathways in developing zebrafish.Mol Endocrinol2012
21868451The estrogen-regulated transcription factor PITX1 coordinates gene-specific regulation by estrogen receptor-alpha in breast cancer cells.Mol Endocrinol2011
21189224Systems approaches to molecular cancer diagnostics.Discov Med2010
16306086Estrogen dendrimer conjugates that preferentially activate extranuclear, nongenomic versus genomic pathways of estrogen action.Mol Endocrinol2006
16141343Estrogen down-regulation of the corepressor N-CoR: mechanism and implications for estrogen derepression of N-CoR-regulated genes.Proc Natl Acad Sci U S A2005
20654526Use of transgenic cell lines in mechanistic studies of drug metabolism.Toxicol In Vitro1999
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Collaborators

Institute for Systems Biology
Co-authored papers 34
Mayo Clinic
Co-authored papers 14
Emory Center for Neurodegenerative Disease
Co-authored papers 14
Mayo Clinic
Co-authored papers 11
Mayo Clinic
Co-authored papers 11
Center for Translational Research in Neurodegenerative Disease, University of Florida
Co-authored papers 10
Center for Phenomic Health, The Buck Institute for Research on Aging
Co-authored papers 8
Mayo Clinic Jacksonville
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Mayo Clinic
Co-authored papers 7
Mayo Clinic
Co-authored papers 6
Benaroya Research Institute at Virginia Mason, Institute for Systems Biology, Sage Bionetworks, University of Illinois at Urbana-Champaign
Co-authored papers 6
Emory University School of Medicine
Co-authored papers 6
Center for Translational Research in Neurodegenerative Disease, University of Florida
Co-authored papers 5
Gannan Medical University
Co-authored papers 5
Institute for Systems Biology
Co-authored papers 5
Goizueta Alzheimer's Disease Research Center, Emory University School of Medicine
Co-authored papers 4
Mayo Clinic Florida
Co-authored papers 4
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 4
Mayo Clinic
Co-authored papers 4
Institute for Systems Biology
Co-authored papers 4
Center for Translational Research in Neurodegenerative Disease, University of Florida
Co-authored papers 4
Emory University School of Medicine
Co-authored papers 4
Mayo Clinic
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Mayo Clinic
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College of Medicine, University of Florida
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Institute for Systems Biology
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Goizueta Alzheimer's Disease Research Center, Emory University School of Medicine
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Center for Translational Research in Neurodegenerative Disease, University of Florida
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Center for Clinical and Translational Science, Mayo Clinic
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