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Author Details

Julia Chamot-Rooke
Institut Pasteur, Universite Paris Cite, CNRS UAR4
1999
101
29
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37480175Monitoring mAb proteoforms in mouse plasma using an automated immunocapture combined with top-down and middle-down mass spectrometry.Proteomics2024
36822210A multiparameter optimization in middle-down analysis of monoclonal antibodies by LC-MS/MS.J Mass Spectrom2023
37245862Biological differences between FIM2 and FIM3 fimbriae of Bordetella pertussis: not just the serotype.Microbes Infect2023
37235544Comparing Top-Down Proteoform Identification: Deconvolution, PrSM Overlap, and PTM Detection.J Proteome Res2023
37071535Shigella IpaA mediates actin bundling through diffusible vinculin oligomers with activation imprint.Cell Rep2023
37298831BotCl, the First Chlorotoxin-like Peptide Inhibiting Newcastle Disease Virus: The Emergence of a New Scorpion Venom AMPs Family.Molecules2023
36653476Author Correction: Structural and molecular determinants for the interaction of ExbB from Serratia marcescens and HasB, a TonB paralog.Commun Biol2023
36804625DiagnoMass: A proteomics hub for pinpointing discriminative spectral clusters.J Proteomics2023
36737754Widespread amyloidogenicity potential of multiple myeloma patient-derived immunoglobulin light chains.BMC Biol2023
34747040The ion-coupling mechanism of human excitatory amino acid transporters.EMBO J2022
35418619Structural and molecular determinants for the interaction of ExbB from Serratia marcescens and HasB, a TonB paralog.Commun Biol2022
36484105Salmonella antibacterial Rhs polymorphic toxin inhibits translation through ADP-ribosylation of EF-Tu P-loop.Nucleic Acids Res2022
36002005Expansion of nickel binding- and histidine-rich proteins during gastric adaptation of Helicobacter species.Metallomics2022
35900852Design and in vitro characterization of RXR variants as tools to investigate the biological role of endogenous rexinoids.J Mol Endocrinol2022
34792554TDFragMapper: a visualization tool for evaluating experimental parameters in top-down proteomics.Bioinformatics2022
32929970Optimization of a Top-Down Proteomics Platform for Closely Related Pathogenic Bacterial Discrimination.J Proteome Res2021
33715301Mass spectrometry-based top-down and bottom-up approaches for proteomic analysis of the Moroccan Buthus occitanus scorpion venom.FEBS Open Bio2021
33617236Advanced <i>In Vivo</i> Cross-Linking Mass Spectrometry Platform to Characterize Proteome-Wide Protein Interactions.Anal Chem2021
33856212DiagnoTop: A Computational Pipeline for Discriminating Bacterial Pathogens without Database Search.J Am Soc Mass Spectrom2021
34853317Mounting, structure and autocleavage of a type VI secretion-associated Rhs polymorphic toxin.Nat Commun2021
34767442The Human Proteoform Project: Defining the human proteome.Sci Adv2021
34292722<i>De Novo</i> Sequencing of Antibody Light Chain Proteoforms from Patients with Multiple Myeloma.Anal Chem2021
34089898Leveraging the partition selection bias to achieve a high-quality clustering of mass spectra.J Proteomics2021
33165572ProteoCombiner: integrating bottom-up with top-down proteomics data for improved proteoform assessment.Bioinformatics2021
33368564Mass-spectrometry analysis of the human pineal proteome during night and day and in autism.J Pineal Res2021
32484292Extensive flavivirus E trimer breathing accompanies stem zippering of the post-fusion hairpin.EMBO Rep2020
32022687Defective lytic transglycosylase disrupts cell morphogenesis by hindering cell wall de-<i>O</i>-acetylation in <i>Neisseria meningitidis</i>.Elife2020
33065067Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry.Structure2020
32812765Interlaboratory Study for Characterizing Monoclonal Antibodies by Top-Down and Middle-Down Mass Spectrometry.J Am Soc Mass Spectrom2020
32350888Structural basis for loading and inhibition of a bacterial T6SS phospholipase effector by the VgrG spike.EMBO J2020
32321914The Flemmingsome reveals an ESCRT-to-membrane coupling via ALIX/syntenin/syndecan-4 required for completion of cytokinesis.Nat Commun2020
30715205Top-Down Garbage Collector: a tool for selecting high-quality top-down proteomics mass spectra.Bioinformatics2019
31609039Deep mutational scanning of the Neisseria meningitidis major pilin reveals the importance of pilus tip-mediated adhesion.EMBO J2019
31451767A five-level classification system for proteoform identifications.Nat Methods2019
31249407Best practices and benchmarks for intact protein analysis for top-down mass spectrometry.Nat Methods2019
29229758The stress sigma factor of RNA polymerase RpoS/Ï¿<sup>S</sup> is a solvent-exposed open molecule in solution.Biochem J2018
30082683Characterization of LE3 and LE4, the only lytic phages known to infect the spirochete Leptospira.Sci Rep2018
30125099eXL-MS: An Enhanced Cross-Linking Mass Spectrometry Workflow To Study Protein Complexes.Anal Chem2018
30323254Biogenesis and structure of a type VI secretion baseplate.Nat Microbiol2018
30334738Consensus designs and thermal stability determinants of a human glutamate transporter.Elife2018
29388937Characterization of homodimer interfaces with cross-linking mass spectrometry and isotopically labeled proteins.Nat Protoc2018
29483188A step-by-step <b><i>in crystallo</i></b> guide to bond cleavage and 1,6-anhydro-sugar product synthesis by a peptidoglycan-degrading lytic transglycosylase.J Biol Chem2018
29397739ProForma: A Standard Proteoform Notation.J Proteome Res2018
29393895Glycosylphosphatidylinositol Anchors from Galactomannan and GPI-Anchored Protein Are Synthesized by Distinct Pathways in Aspergillus fumigatus.J Fungi (Basel)2018
29337218Calcium-dependent disorder-to-order transitions are central to the secretion and folding of the CyaA toxin of Bordetella pertussis, the causative agent of whooping cough.Toxicon2018
27903652Prepore Stability Controls Productive Folding of the BAM-independent Multimeric Outer Membrane Secretin PulD.J Biol Chem2017
28186229DiagnoProt: a tool for discovery of new molecules by mass spectrometry.Bioinformatics2017
28186111Stability, structural and functional properties of a monomeric, calcium-loaded adenylate cyclase toxin, CyaA, from Bordetella pertussis.Sci Rep2017
28424515Structure and allosteric inhibition of excitatory amino acid transporter 1.Nature2017
29287065Calmodulin fishing with a structurally disordered bait triggers CyaA catalysis.PLoS Biol2017
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Co-authored papers 5
Universite Paris-Saclay, CNRS, Institute for Integrative Biology of the Cell (I2BC)
Co-authored papers 4
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Co-authored papers 4
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Co-authored papers 4
University of Wisconsin-Madison
Co-authored papers 4
EMBL-European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 3
Institut Pasteur
Co-authored papers 3
Institute of Chemistry, University of Campinas
Co-authored papers 3
University of Wisconsin-Madison
Co-authored papers 3
Ecole Polytechnique Federale de Lausanne (EPFL), University of Lausanne
Co-authored papers 2
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CNRS UMR 5086 and Universite Claude Bernard Lyon 1
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ETH Zurich
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