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Author Details

Farris L Poole
University of Georgia
2000
59
19
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36572723Mixed heavy metal stress induces global iron starvation response.ISME J2023
37793542Mixed nitrate and metal contamination influences operational speciation of toxic and essential elements.Environ Pollut2023
38061393Characterization of the Membrane-Associated Electron-Bifurcating Flavoenzyme EtfABCX from the Hyperthermophilic Bacterium <i>Thermotoga maritima</i>.Biochemistry2023
36051760Obligately aerobic human gut microbe expresses an oxygen resistant tungsten-containing oxidoreductase for detoxifying gut aldehydes.Front Microbiol2022
37938300Genotype to ecotype in niche environments: adaptation of Arthrobacter to carbon availability and environmental conditions.ISME Commun2022
35475637Complete Genome Sequence of Bacillus cereus Strain CPT56D-587-MTF, Isolated from a Nitrate- and Metal-Contaminated Subsurface Environment.Microbiol Resour Announc2022
35875533An Abundant and Diverse New Family of Electron Bifurcating Enzymes With a Non-canonical Catalytic Mechanism.Front Microbiol2022
36053980Ecophysiological and genomic analyses of a representative isolate of highly abundant Bacillus cereus strains in contaminated subsurface sediments.Environ Microbiol2022
34060910Transcriptional Regulation of Plant Biomass Degradation and Carbohydrate Utilization Genes in the Extreme Thermophile <i>Caldicellulosiruptor bescii</i>.mSystems2021
34432491Deciphering Microbial Metal Toxicity Responses via Random Bar Code Transposon Site Sequencing and Activity-Based Metabolomics.Appl Environ Microbiol2021
34686601Tungsten enzymes play a role in detoxifying food and antimicrobial aldehydes in the human gut microbiome.Proc Natl Acad Sci U S A2021
31278423Characterization of thiosulfate reductase from Pyrobaculum aerophilum heterologously produced in Pyrococcus furiosus.Extremophiles2020
33193240Characterization of a Metal-Resistant <i>Bacillus</i> Strain With a High Molybdate Affinity ModA From Contaminated Sediments at the Oak Ridge Reservation.Front Microbiol2020
33122416Draft Genome Sequence of <i>Bacillus</i> sp. Strain EB106-08-02-XG196, Isolated from High-Nitrate-Contaminated Sediment.Microbiol Resour Announc2020
32859593Improving Arsenic Tolerance of Pyrococcus furiosus by Heterologous Expression of a Respiratory Arsenate Reductase.Appl Environ Microbiol2020
32986713In-field bioreactors demonstrate dynamic shifts in microbial communities in response to geochemical perturbations.PLoS One2020
32417512Characterization of subsurface media from locations up- and down-gradient of a uranium-contaminated aquifer.Chemosphere2020
30289197Iron- and aluminium-induced depletion of molybdenum in acidic environments impedes the nitrogen cycle.Environ Microbiol2019
31253673Nitrate-Utilizing Microorganisms Resistant to Multiple Metals from the Heavily Contaminated Oak Ridge Reservation.Appl Environ Microbiol2019
31097544The thermophilic biomass-degrading bacterium <i>Caldicellulosiruptor bescii</i> utilizes two enzymes to oxidize glyceraldehyde 3-phosphate during glycolysis.J Biol Chem2019
29797090Native xylose-inducible promoter expands the genetic tools for the biomass-degrading, extremely thermophilic bacterium Caldicellulosiruptor bescii.Extremophiles2018
30181217Characterization of membrane-bound sulfane reductase: A missing link in the evolution of modern day respiratory complexes.J Biol Chem2018
30009131Engineering redox-balanced ethanol production in the cellulolytic and extremely thermophilic bacterium, <i>Caldicellulosiruptor bescii</i>.Metab Eng Commun2018
29588665The diversity and specificity of the extracellular proteome in the cellulolytic bacterium <i>Caldicellulosiruptor bescii</i> is driven by the nature of the cellulosic growth substrate.Biotechnol Biofuels2018
27913415A Highly Expressed High-Molecular-Weight S-Layer Complex of Pelosinus sp. Strain UFO1 Binds Uranium.Appl Environ Microbiol2017
28112946Temporal Dynamics of In-Field Bioreactor Populations Reflect the Groundwater System and Respond Predictably to Perturbation.Environ Sci Technol2017
28476773Genome Stability in Engineered Strains of the Extremely Thermophilic Lignocellulose-Degrading Bacterium Caldicellulosiruptor bescii.Appl Environ Microbiol2017
28448069Systems biology guided by XCMS Online metabolomics.Nat Methods2017
28726794Biological iron-sulfur storage in a thioferrate-protein nanoparticle.Nat Commun2017
28848534Mechanisms of Chromium and Uranium Toxicity in <i>Pseudomonas stutzeri</i> RCH2 Grown under Anaerobic Nitrate-Reducing Conditions.Front Microbiol2017
27045776Global Isotope Metabolomics Reveals Adaptive Strategies for Nitrogen Assimilation.ACS Chem Biol2016
27151784Near-Complete Genome Sequence of Clostridium paradoxum Strain JW-YL-7.Genome Announc2016
27560777Smartphone Analytics: Mobilizing the Lab into the Cloud for Omic-Scale Analyses.Anal Chem2016
25979890Molybdenum Availability Is Key to Nitrate Removal in Contaminated Groundwater Environments.Appl Environ Microbiol2015
26276113A New Class of Tungsten-Containing Oxidoreductase in Caldicellulosiruptor, a Genus of Plant Biomass-Degrading Thermophilic Bacteria.Appl Environ Microbiol2015
26452555Determining Roles of Accessory Genes in Denitrification by Mutant Fitness Analyses.Appl Environ Microbiol2015
24316482Degradation of high loads of crystalline cellulose and of unpretreated plant biomass by the thermophilic bacterium Caldicellulosiruptor bescii.Bioresour Technol2014
25316790Aggregation propensities of superoxide dismutase G93 hotspot mutants mirror ALS clinical phenotypes.Proc Natl Acad Sci U S A2014
25368184Single gene insertion drives bioalcohol production by a thermophilic archaeon.Proc Natl Acad Sci U S A2014
25189589Complete Genome Sequence of Pelosinus sp. Strain UFO1 Assembled Using Single-Molecule Real-Time DNA Sequencing Technology.Genome Announc2014
24669200Characterization of ten heterotetrameric NDP-dependent acyl-CoA synthetases of the hyperthermophilic archaeon Pyrococcus furiosus.Archaea2014
24706256Metallomics of two microorganisms relevant to heavy metal bioremediation reveal fundamental differences in metal assimilation and utilization.Metallomics2014
22636774Caldicellulosiruptor core and pangenomes reveal determinants for noncellulosomal thermophilic deconstruction of plant biomass.J Bacteriol2012
22636780Genome sequencing of a genetically tractable Pyrococcus furiosus strain reveals a highly dynamic genome.J Bacteriol2012
21227922Insights into plant biomass conversion from the genome of the anaerobic thermophilic bacterium Caldicellulosiruptor bescii DSM 6725.Nucleic Acids Res2011
21356119A computational framework for proteome-wide pursuit and prediction of metalloproteins using ICP-MS and MS/MS data.BMC Bioinformatics2011
20639861Microbial metalloproteomes are largely uncharacterized.Nature2010
19043064Novel multiprotein complexes identified in the hyperthermophilic archaeon Pyrococcus furiosus by non-denaturing fractionation of the native proteome.Mol Cell Proteomics2009
19620974Robust, high-throughput solution structural analyses by small angle X-ray scattering (SAXS).Nat Methods2009
19346307Genome sequence of the anaerobic, thermophilic, and cellulolytic bacterium "Anaerocellum thermophilum" DSM 6725.J Bacteriol2009
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Collaborators

Michael W W Adams
University of Georgia
Co-authored papers 58
Michael P Thorgersen
University of Georgia
Co-authored papers 23
Adam P Arkin
Lawrence Berkeley National Laboratory
Co-authored papers 15
Terry C Hazen
University of Tennessee
Co-authored papers 11
Gary Siuzdak
Scripps Center for Metabolomics and Mass Spectrometry, The Scripps Research Institute
Co-authored papers 9
Dwayne A Elias
Oak Ridge National Laboratory
Co-authored papers 7
Adam M Deutschbauer
Lawrence Berkeley National Laboratory
Co-authored papers 6
Matthew W Fields
Center for Biofilm Engineering (CBE), Montana State University
Co-authored papers 5
John-Marc Chandonia
Lawrence Berkeley National Laboratory
Co-authored papers 5
Romy Chakraborty
Lawrence Berkeley National Laboratory
Co-authored papers 5
Judy D Wall
University of Missouri
Co-authored papers 5
John A Tainer
The University of Texas MD Anderson Cancer Center
Co-authored papers 4
Hilary P Benton
Scripps Center for Metabolomics and Mass Spectrometry, The Scripps Research Institute
Co-authored papers 3
Jizhong Zhou
Institute for Environmental Genomics, University of Oklahoma
Co-authored papers 3
Paul D Adams
Lawrence Berkeley National Laboratory
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Erica M Forsberg
Viral Information Institute, San Diego State University
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Jeremy L Praissman
Co-authored papers 3
Erica L Majumder
University of Missouri
Co-authored papers 3
Ying Xu
The China-Japan Union Hospital, Jilin University
Co-authored papers 3
David A Stahl
University of Washington
Co-authored papers 3
Grant M Zane
University of Missouri
Co-authored papers 3
Julijana Ivanisevic
University of Lausanne
Co-authored papers 2
Duane Rinehart
Scripps Center for Metabolomics, The Scripps Research Institute
Co-authored papers 2
Gregory Krantz
Montana State University
Co-authored papers 2
Tao Huan
University of British Columbia
Co-authored papers 2
Pavel S Novichkov
Lawrence Berkeley National Laboratory
Co-authored papers 2
Aries Aisporna
Scripps Center for Metabolomics and Mass Spectrometry, The Scripps Research Institute
Co-authored papers 2
Luke L Lairson
The Scripps Research Institute
Co-authored papers 2
Paul D Robbins
University of Minnesota
Co-authored papers 2
Dawn M Klingeman
Oak Ridge National Laboratory
Co-authored papers 2
Release 1.2