Author details

Full Name

Chia-Lin Wei

Affiliation

ORCID

Career Start Year

1994

Papers

126

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36639381	ChIATAC is an efficient strategy for multi-omics mapping of 3D epigenomes from low-cell inputs.		2023
35753910	Guilt by association: EcDNA as a mobile transactivator in cancer.		2022
36104354	Epigenetic activation of the FLT3 gene by ZNF384 fusion confers a therapeutic susceptibility in acute lymphoblastic leukemia.	Nat Commun	2022
33836152	Oncogenic extrachromosomal DNA functions as mobile enhancers to globally amplify chromosomal transcription.	Cancer Cell	2021
35602196	Reduced subgenomic RNA expression is a molecular indicator of asymptomatic SARS-CoV-2 infection.	Commun Med (Lond)	2021
33739574	Sox2 controls neural stem cell self-renewal through a Fos-centered gene regulatory network.	Stem Cells	2021
32832596	ChIA-PIPE: A fully automated pipeline for comprehensive ChIA-PET data analysis and visualization.	Science advances	2020
32393309	Chromatin topology reorganization and transcription repression by PML-RARÎ± in acute promyeloid leukemia.	Genome Biol	2020
32094912	Chromatin interaction analyses elucidate the roles of PRC2-bound silencers in mouse development.	Nat Genet	2020
30933081	Ultra-long Read Sequencing for Whole Genomic DNA Analysis.	Journal of Visualized Experiments	2019
30624408	Linked-read Sequencing Analysis Reveals Tumor-specific Genome Variation Landscapes in Neurofibromatosis Type 2 (NF2) Patients.	Otology and Neurotology	2019
30871085	Complex Microbiome in Brain Abscess Revealed by Whole-Genome Culture-Independent and Culture-Based Sequencing.	Journal of Clinical Medicine	2019
31431802	Sox2-Dependent 3D Chromatin Interactomes in Transcription, Neural Stem Cell Proliferation and Neurodevelopmental Diseases.	Journal of Experimental Neuroscience	2019
30849367	Mapping the Global Chromatin Connectivity Network for Sox2 Function in Neural Stem Cell Maintenance.	Cell Stem Cell	2019
30778195	Multiplex chromatin interactions with single-molecule precision.	Nature	2019
29315344	Culture-independent analysis of liver abscess using nanopore sequencing.	PLoS ONE	2018
29946165	Specialized proteomic responses and an ancient photoprotection mechanism sustain marine green algal growth during phosphate limitation.	Nat Microbiol	2018
29713081	Picky comprehensively detects high-resolution structural variants in nanopore long reads.	Nat Methods	2018
29749714	Transcriptional responses of the marine green alga Micromonas pusilla and an infecting prasinovirus under different phosphate conditions.	Environmental Microbiology	2018
29732603	Sox2 conditional mutation in mouse causes ataxic symptoms, cerebellar vermis hypoplasia, and postnatal defects of Bergmann glia.	GLIA	2018
28186631	DNA methylation and gene expression regulation associated with vascularization in Sorghum bicolor.	New Phytol	2017
26234679	Functional features of EVI1 and EVI1Î¿324 isoforms of MECOM gene in genome-wide transcription regulation and oncogenicity.	Oncogene	2016
27434306	Identifying Aspects of the Post-Transcriptional Program Governing the Proteome of the Green Alga Micromonas pusilla.	PLoS One	2016
27029936	Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants.	BMC Genomics	2016
26686651	CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription.	Cell	2015
27250540	Lineage-specific chromatin signatures reveal a regulator of lipid metabolism in microalgae.		2015
26426343	Diversity and population structure of northern switchgrass as revealed through exome capture sequencing.	Plant Journal	2015
26029726	Coherence analysis discriminates between retroviral integration patterns in CD34(+) cells transduced under differing clinical trial conditions.	Mol Ther Methods Clin Dev	2015
24777452	Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance.	Nat Genet	2014
25282150	A genome-wide map of adeno-associated virus-mediated human gene targeting.	Nat Struct Mol Biol	2014
25267653	Marine algae and land plants share conserved phytochrome signaling systems.	Proceedings of the National Academy of Sciences of the United States of America	2014
25043018	Activation and repression by oncogenic MYC shape tumour-specific gene expression profiles.	Nature	2014
24682209	A near complete snapshot of the Zea mays seedling transcriptome revealed from ultra-deep sequencing.	Sci Rep	2014
24976882	Genome sequence of the Ornithopus/Lupinus-nodulating Bradyrhizobium sp. strain WSM471.	Stand Genomic Sci	2013
24360274	Interactome maps of mouse gene regulatory domains reveal basic principles of transcriptional regulation.	Cell	2013
24213634	Chromatin connectivity maps reveal dynamic promoter-enhancer long-range associations.	Nature	2013
23846281	Draft Genome Sequence of Frankia sp. Strain BCU110501, a Nitrogen-Fixing Actinobacterium Isolated from Nodules of Discaria trinevis.	Genome Announc	2013
23846272	Draft Genome Sequence of Frankia sp. Strain BMG5.12, a Nitrogen-Fixing Actinobacterium Isolated from Tunisian Soils.	Genome Announc	2013
24019992	Thermus oshimai JL-2 and T. thermophilus JL-18 genome analysis illuminates pathways for carbon, nitrogen, and sulfur cycling.	Stand Genomic Sci	2013
23833133	Genome Sequence of Streptomyces viridosporus Strain T7A ATCC 39115, a Lignin-Degrading Actinomycete.	Genome Announc	2013
24501624	Complete genome sequence of Dehalobacter restrictus PER-K23(T.).	Stand Genomic Sci	2013
23405355	Whole Genome Sequencing of Thermus oshimai JL-2 and Thermus thermophilus JL-18, Incomplete Denitrifiers from the United States Great Basin.	Genome Announc	2013
25197439	Genome sequence of the Listia angolensis microsymbiont Microvirga lotononidis strain WSM3557(T.).	Stand Genomic Sci	2013
24976894	Genome sequence of the Lebeckia ambigua-nodulating "Burkholderia sprentiae" strain WSM5005(T.).	Stand Genomic Sci	2013
24976885	Genome sequence of the Trifolium rueppellianum -nodulating Rhizobium leguminosarum bv. trifolii strain WSM2012.	Stand Genomic Sci	2013
24976884	Genome sequence of the lupin-nodulating Bradyrhizobium sp. strain WSM1417.	Stand Genomic Sci	2013
24976883	Genome sequence of the South American clover-nodulating Rhizobium leguminosarum bv. trifolii strain WSM597.	Stand Genomic Sci	2013
24976881	Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain TA1.	Stand Genomic Sci	2013
22265404	Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation.	Cell	2012
22308434	Ecotopic viral integration site 1 (EVI1) regulates multiple cellular processes important for cancer and is a synergistic partner for FOS protein in invasive tumors.	Proc Natl Acad Sci U S A	2012