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Author Details

Zamin K Yang
Oak Ridge National Laboratory
1996
57
32
PMIDPaper TitleJournal TitlePublished Year
37553090Tectonic and geological setting influence hot spring microbiology.Environ Microbiol2023
37938724Morphine and high-fat diet differentially alter the gut microbiota composition and metabolic function in lean versus obese mice.ISME Commun2022
34135464Climate-driven divergence in plant-microbiome interactions generates range-wide variation in bud break phenology.Commun Biol2021
33482901Correction to: Rhizosphere microbiomes diverge among Populus trichocarpa plant-host genotypes and chemotypes, but it depends on soil origin.Microbiome2021
34227117Natural soil microbiome variation affects spring foliar phenology with consequences for plant productivity and climate-driven range shifts.New Phytol2021
32540392Development of a clostridia-based cell-free system for prototyping genetic parts and metabolic pathways.Metab Eng2020
32606021Plant Hosts Modify Belowground Microbial Community Response to Extreme Drought.mSystems2020
32760379Comparative Analysis of Microbial Diversity Across Temperature Gradients in Hot Springs From Yellowstone and Iceland.Front Microbiol2020
30659721Climate-driven reduction of genetic variation in plant phenology alters soil communities and nutrient pools.Glob Chang Biol2019
29978909Methanogenic Archaea dominate mature heartwood habitats of Eastern Cottonwood (Populus deltoides).New Phytol2019
31211785One-time nitrogen fertilization shifts switchgrass soil microbiomes within a context of larger spatial and temporal variation.PLoS One2019
31570900Targeted isolation and cultivation of uncultivated bacteria by reverse genomics.Nat Biotechnol2019
30970176Scavenging organic nitrogen and remodelling lipid metabolism are key survival strategies adopted by the endophytic fungi, Serendipita vermifera and Serendipita bescii to alleviate nitrogen and phosphorous starvation in vitro.Environ Microbiol Rep2019
31103040Rhizosphere microbiomes diverge among Populus trichocarpa plant-host genotypes and chemotypes, but it depends on soil origin.Microbiome2019
29433554The Populus holobiont: dissecting the effects of plant niches and genotype on the microbiome.Microbiome2018
30250505A dynamic model of lignin biosynthesis in <i>Brachypodium distachyon</i>.Biotechnol Biofuels2018
30202438Development and characterization of stable anaerobic thermophilic methanogenic microbiomes fermenting switchgrass at decreasing residence times.Biotechnol Biofuels2018
29449882Mathematical models of lignin biosynthesis.Biotechnol Biofuels2018
29404422Abiotic Stresses Shift Belowground <i>Populus</i>-Associated Bacteria Toward a Core Stress Microbiome.mSystems2018
27422831Enrichment of Root Endophytic Bacteria from Populus deltoides and Single-Cell-Genomics Analysis.Appl Environ Microbiol2016
27200001Two Poplar-Associated Bacterial Isolates Induce Additive Favorable Responses in a Constructed Plant-Microbiome System.Front Plant Sci2016
25012904Life on the edge: functional genomic response of Ignicoccus hospitalis to the presence of Nanoarchaeum equitans.ISME J2015
26111937Genome-scale resources for Thermoanaerobacterium saccharolyticum.BMC Syst Biol2015
24402330Engineering acidic Streptomyces rubiginosus D-xylose isomerase by rational enzyme design.Protein Eng Des Sel2014
25132082L-Arabinose binding, isomerization, and epimerization by D-xylose isomerase: X-ray/neutron crystallographic and molecular simulation study.Structure2014
24682300Microbial community stratification linked to utilization of carbohydrates and phosphorus limitation in a boreal peatland at Marcell Experimental Forest, Minnesota, USA.Appl Environ Microbiol2014
23387867Comparative metagenomic and rRNA microbial diversity characterization using archaeal and bacterial synthetic communities.Environ Microbiol2013
24376771Hexavalent chromium reduction under fermentative conditions with lactate stimulated native microbial communities.PLoS One2013
24146861A multifactor analysis of fungal and bacterial community structure in the root microbiome of mature Populus deltoides trees.PLoS One2013
22170420Distinct and complex bacterial profiles in human periodontitis and health revealed by 16S pyrosequencing.ISME J2012
22933770Draft genome sequences for two metal-reducing Pelosinus fermentans strains isolated from a Cr(VI)-contaminated site and for type strain R7.J Bacteriol2012
22695862Host genetic and environmental effects on mouse intestinal microbiota.ISME J2012
22823947Clostridium thermocellum ATCC27405 transcriptomic, metabolomic and proteomic profiles after ethanol stress.BMC Genomics2012
22443386Inter-field variability in the microbial communities of hydrothermal vent deposits from a back-arc basin.Geobiology2012
22628515Draft genome sequences for Clostridium thermocellum wild-type strain YS and derived cellulose adhesion-defective mutant strain AD2.J Bacteriol2012
21057024Mercury and other heavy metals influence bacterial community structure in contaminated Tennessee streams.Appl Environ Microbiol2011
21764967A limited microbial consortium is responsible for extended bioreduction of uranium in a contaminated aquifer.Appl Environ Microbiol2011
21764952Distinct microbial communities within the endosphere and rhizosphere of Populus deltoides roots across contrasting soil types.Appl Environ Microbiol2011
21418499Microbial community structure of hydrothermal deposits from geochemically different vent fields along the Mid-Atlantic Ridge.Environ Microbiol2011
20497531Establishment and metabolic analysis of a model microbial community for understanding trophic and electron accepting interactions of subsurface anaerobic environments.BMC Microbiol2010
21203399Physiological roles of ArcA, Crp, and EtrA and their interactive control on aerobic and anaerobic respiration in Shewanella oneidensis.PLoS One2010
20725722Characterization of archaeal community in contaminated and uncontaminated surface stream sediments.Microb Ecol2010
20445634Impact of elevated nitrate on sulfate-reducing bacteria: a comparative study of Desulfovibrio vulgaris.ISME J2010
19321007Snapshot of iron response in Shewanella oneidensis by gene network reconstruction.BMC Genomics2009
19581361The electron transfer system of syntrophically grown Desulfovibrio vulgaris.J Bacteriol2009
19737303Contribution of mobile genetic elements to Desulfovibrio vulgaris genome plasticity.Environ Microbiol2009
19387485Reduction of nitrate in Shewanella oneidensis depends on atypical NAP and NRF systems with NapB as a preferred electron transport protein from CymA to NapA.ISME J2009
18221523Probing regulon of ArcA in Shewanella oneidensis MR-1 by integrated genomic analyses.BMC Genomics2008
17098911Microarray-based analysis of microbial community RNAs by whole-community RNA amplification.Appl Environ Microbiol2007
17921288Response of Desulfovibrio vulgaris to alkaline stress.J Bacteriol2007
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Collaborators

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University of Tennessee
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Co-authored papers 6
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Co-authored papers 4
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E O Lawrence Berkeley National Laboratory, UCSF Medical Center, University of California, Berkeley, University of Chicago
Co-authored papers 4
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Co-authored papers 4
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Co-authored papers 3
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Co-authored papers 3
Los Alamos National Laboratory
Co-authored papers 3
University of Idaho
Co-authored papers 3
Institute for Environmental Genomics, University of Oklahoma
Co-authored papers 3
Lawrence Berkeley National Laboratory
Co-authored papers 3
Massachusetts Institute of Technology 21 Ames St. Cambridge
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University of California berkeley
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Joint BioEnergy Institute
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Lawrence Berkeley National Laboratory, Joint BioEnergy Institute
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University of Rhode Island
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