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Author Details

Daniel Jacob
University Bordeaux, Centre INRAE de Nouvelle-Aquitaine Bordeaux
2004
42
21
Timothy Clark (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37418094NMR metabolite quantification of a synthetic urine sample: an inter-laboratory comparison of processing workflows.Metabolomics2023
37479985Multi-omics quantitative data of tomato fruit unveils regulation modes of least variable metabolites.BMC Plant Biol2023
36080394Development, Validation, and Use of <sup>1</sup>H-NMR Spectroscopy for Evaluating the Quality of Acerola-Based Food Supplements and Quantifying Ascorbic Acid.Molecules2022
35699774PeakForest: a multi-platform digital infrastructure for interoperable metabolite spectral data and metadata management.Metabolomics2022
33410508Maize metabolome and proteome responses to controlled cold stress partly mimic early-sowing effects in the field and differ from those of Arabidopsis.Plant Cell Environ2021
33889396Putative imbalanced amino acid metabolism in rainbow trout long term fed a plant-based diet as revealed by <sup>1</sup>H-NMR metabolomics.J Nutr Sci2021
32213984Comparative Metabolomics and Molecular Phylogenetics of Melon (<i>Cucumis melo</i>, Cucurbitaceae) Biodiversity.Metabolites2020
33136383Hyperpolarized NMR Metabolomics at Natural <sup>13</sup>C Abundance.Anal Chem2020
32592486Biomass composition explains fruit relative growth rate and discriminates climacteric from non-climacteric species.J Exp Bot2020
32120848Integrative Metabolomics for Assessing the Effect of Insect (<i>Hermetia illucens</i>) Protein Extract on Rainbow Trout Metabolism.Metabolites2020
30535405PhenoMeNal: processing and analysis of metabolomics data in the cloud.Gigascience2019
30830443Optimizing 1D <sup>1</sup>H-NMR profiling of plant samples for high throughput analysis: extract preparation, standardization, automation and spectra processing.Metabolomics2019
30929085Metabolomic characterization of sunflower leaf allows discriminating genotype groups or stress levels with a minimal set of metabolic markers.Metabolomics2019
31075946NMR-Based Tissular and Developmental Metabolomics of Tomato Fruit.Metabolites2019
29035042nmrML: A Community Supported Open Data Standard for the Description, Storage, and Exchange of NMR Data.Anal Chem2018
30830438Metabotyping of 30 maize hybrids under early-sowing conditions reveals potential marker-metabolites for breeding.Metabolomics2018
30830357Characterization of GMO or glyphosate effects on the composition of maize grain and maize-based diet for rat feeding.Metabolomics2018
29157494Plant metabolism as studied by NMR spectroscopy.Prog Nucl Magn Reson Spectrosc2017
28261014NMRProcFlow: a graphical and interactive tool dedicated to 1D spectra processing for NMR-based metabolomics.Metabolomics2017
27253320Highly Repeatable Dissolution Dynamic Nuclear Polarization for Heteronuclear NMR Metabolomics.Anal Chem2016
25527831Workflow4Metabolomics: a collaborative research infrastructure for computational metabolomics.Bioinformatics2015
26491418COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access.Metabolomics2015
25873655Metabolomic profiling in tomato reveals diel compositional changes in fruit affected by source-sink relationships.J Exp Bot2015
24218206MeRy-B, a metabolomic database and knowledge base for exploring plant primary metabolism.Methods Mol Biol2014
23525538An efficient spectra processing method for metabolite identification from 1H-NMR metabolomics data.Anal Bioanal Chem2013
24151307Deciphering genetic diversity and inheritance of tomato fruit weight and composition through a systems biology approach.J Exp Bot2013
23766410Complete Genome Sequence of Mycoplasma putrefaciens Strain 9231, One of the Agents of Contagious Agalactia in Goats.Genome Announc2013
23766408Draft Genome Sequences of Mycoplasma alkalescens, Mycoplasma arginini, and Mycoplasma bovigenitalium, Three Species with Equivocal Pathogenic Status for Cattle.Genome Announc2013
23766401Draft Genome Sequences of Mycoplasma auris and Mycoplasma yeatsii, Two Species of the Ear Canal of Caprinae.Genome Announc2013
23468041Management and dissemination of MS proteomic data with PROTICdb: example of a quantitative comparison between methods of protein extraction.Proteomics2013
22139927MetaBase--the wiki-database of biological databases.Nucleic Acids Res2012
22281772Toward interoperable bioscience data.Nat Genet2012
21324191Mycoplasma mycoides, from "mycoides Small Colony" to "capri". A microevolutionary perspective.BMC Genomics2011
21668943MeRy-B: a web knowledgebase for the storage, visualization, analysis and annotation of plant NMR metabolomic profiles.BMC Plant Biol2011
20122262Comparative genomic and proteomic analyses of two Mycoplasma agalactiae strains: clues to the macro- and micro-events that are shaping mycoplasma diversity.BMC Genomics2010
192980591H NMR, GC-EI-TOFMS, and data set correlation for fruit metabolomics: application to spatial metabolite analysis in melon.Anal Chem2009
19909923An integrative genomics approach for deciphering the complex interactions between ascorbate metabolism and fruit growth and composition in tomato.C R Biol2009
19816563Life on arginine for Mycoplasma hominis: clues from its minimal genome and comparison with other human urogenital mycoplasmas.PLoS Genet2009
17511520Being pathogenic, plastic, and sexual while living with a nearly minimal bacterial genome.PLoS Genet2007
17562024Large-scale identification of human genes implicated in epidermal barrier function.Genome Biol2007
17163438Mapping the proteome of poplar and application to the discovery of drought-stress responsive proteins.Proteomics2006
15507000In silico exploration of the fructose-6-phosphate phosphorylation step in glycolysis: genomic evidence of the coexistence of an atypical ATP-dependent along with a PPi-dependent phosphofructokinase in Propionibacterium freudenreichii subsp. shermanii.In Silico Biol2004
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Collaborators

Co-authored papers 7
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Co-authored papers 4
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 4
University of Oxford
Co-authored papers 4
Institute for Inorganic and Analytical Chemistry, Friedrich Schiller University Jena
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Institute of Forensic Medicine, University of Bern
Co-authored papers 3
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Institute of Systems, University of Liverpool
Co-authored papers 3
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Institute of Chemistry and Metabolomics, University of Lubeck
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Oxford e-Research Centre, University of Oxford
Co-authored papers 3
Cambridge University
Co-authored papers 3
Oxford e-Research Centre, Oxford University
Co-authored papers 1
Jealott's Hill International Research Centre
Co-authored papers 1
BGI Hong Kong Tech Co Ltd.
Co-authored papers 1
Leiden Institute of Advanced Computer Science, Leiden University
Co-authored papers 1
University of Lausanne
Co-authored papers 1
Scripps Institution of Oceanography, University of California San Diego
Co-authored papers 1
Biodiversity Institute, University of Oxford
Co-authored papers 1
Connected Discovery Ltd
Co-authored papers 1
Institut des epileptiques
Co-authored papers 1
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Co-authored papers 1
Max Planck Institute of Molecular Plant Physiology
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Texas A&M University, College Station
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National Center for Toxicological Research (NCTR)
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NIOZ Royal Netherlands Institute for Sea Research
Co-authored papers 1
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 1
University of Southern California's Information Sciences Institute (ISI)
Co-authored papers 1
European Bioinformatics Institute
Co-authored papers 1
Amrita University
Co-authored papers 1