Author details

Full Name

Koen Visscher

Affiliation

Inscopix Inc.

ORCID

Career Start Year

1991

Papers

H Index

Expertise

CM4AI Collaborator

Andrej Sali (CM4AI)

PMID	Paper Title	Journal Title	Published Year
37310542	OFraMP: a fragment-based tool to facilitate the parametrization of large molecules.	J Comput Aided Mol Des	2023
37310542	OFraMP: a fragment-based tool to facilitate the parametrization of large molecules.	J Comput Aided Mol Des	2023
34283242	Miniature microscopes for manipulating and recording in vivo brain activity.	Microscopy (Oxf)	2021
34283242	Miniature microscopes for manipulating and recording in vivo brain activity.	Microscopy (Oxf)	2021
32374767	2.7 Ã¿ cryo-EM structure of vitrified M. musculus H-chain apoferritin from a compact 200 keV cryo-microscope.	PLoS One	2020
32374767	2.7 Ã¿ cryo-EM structure of vitrified M. musculus H-chain apoferritin from a compact 200 keV cryo-microscope.	PLoS One	2020
32073849	Deriving a Polarizable Force Field for Biomolecular Building Blocks with Minimal Empirical Calibration.	J Phys Chem B	2020
32073849	Deriving a Polarizable Force Field for Biomolecular Building Blocks with Minimal Empirical Calibration.	J Phys Chem B	2020
30763086	Deriving Force-Field Parameters from First Principles Using a Polarizable and Higher Order Dispersion Model.	J Chem Theory Comput	2019
30763086	Deriving Force-Field Parameters from First Principles Using a Polarizable and Higher Order Dispersion Model.	J Chem Theory Comput	2019
30501058	A QM/MM Derived Polarizable Water Model for Molecular Simulation.	Molecules	2018
30501058	A QM/MM Derived Polarizable Water Model for Molecular Simulation.	Molecules	2018
30289710	Automated Topology Builder Version 3.0: Prediction of Solvation Free Enthalpies in Water and Hexane.	J Chem Theory Comput	2018
29999318	Predicting the Prevalence of Alternative Warfarin Tautomers in Solution.	J Chem Theory Comput	2018
29999318	Predicting the Prevalence of Alternative Warfarin Tautomers in Solution.	J Chem Theory Comput	2018
30289710	Automated Topology Builder Version 3.0: Prediction of Solvation Free Enthalpies in Water and Hexane.	J Chem Theory Comput	2018
27802573	Sense and simplicity in HADDOCK scoring: Lessons from CASP-CAPRI round 1.	Proteins	2017
28730688	Sense and Simplicity in HADDOCK Scoring: Lessons from CASP-CAPRI (page 418).	Proteins	2017
28685953	Supramolecular Organization and Functional Implications of K<sup>+</sup> â¿¿Channel Clusters in Membranes.	Angew Chem Int Ed Engl	2017
28904343	Engineered factor Xa variants retain procoagulant activity independent of direct factor Xa inhibitors.	Nat Commun	2017
27802573	Sense and simplicity in HADDOCK scoring: Lessons from CASP-CAPRI round 1.	Proteins	2017
28133840	A systematic approach to calibrate a transferable polarizable force field parameter set for primary alcohols.	J Comput Chem	2017
28133840	A systematic approach to calibrate a transferable polarizable force field parameter set for primary alcohols.	J Comput Chem	2017
28730688	Sense and Simplicity in HADDOCK Scoring: Lessons from CASP-CAPRI (page 418).	Proteins	2017
28904343	Engineered factor Xa variants retain procoagulant activity independent of direct factor Xa inhibitors.	Nat Commun	2017
28685953	Supramolecular Organization and Functional Implications of K<sup>+</sup> â¿¿Channel Clusters in Membranes.	Angew Chem Int Ed Engl	2017
26970190	-1 Programmed Ribosomal Frameshifting as a Force-Dependent Process.	Prog Mol Biol Transl Sci	2016
26970190	-1 Programmed Ribosomal Frameshifting as a Force-Dependent Process.	Prog Mol Biol Transl Sci	2016
27122118	Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.	Proteins	2016
27122118	Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.	Proteins	2016
25524313	Non-interacting surface solvation and dynamics in protein-protein interactions.	Proteins	2015
25524313	Non-interacting surface solvation and dynamics in protein-protein interactions.	Proteins	2015
26022089	The Supramolecular Organization of a Peptide-Based Nanocarrier at High Molecular Detail.	J Am Chem Soc	2015
26022089	The Supramolecular Organization of a Peptide-Based Nanocarrier at High Molecular Detail.	J Am Chem Soc	2015
24501223	A stochastic model of translation with -1 programmed ribosomal frameshifting.	Phys Biol	2014
24501223	A stochastic model of translation with -1 programmed ribosomal frameshifting.	Phys Biol	2014
23161727	Solvated protein-protein docking using Kyte-Doolittle-based water preferences.	Proteins	2013
23625455	Solvated protein-DNA docking using HADDOCK.	J Biomol NMR	2013
23161727	Solvated protein-protein docking using Kyte-Doolittle-based water preferences.	Proteins	2013
23625455	Solvated protein-DNA docking using HADDOCK.	J Biomol NMR	2013
21320448	Downstream DNA tension regulates the stability of the T7 RNA polymerase initiation complex.	Biophys J	2011
21320448	Downstream DNA tension regulates the stability of the T7 RNA polymerase initiation complex.	Biophys J	2011
21909881	Optical trapping and unfolding of RNA.	Methods Mol Biol	2011
21598975	Mechanical unfolding of the beet western yellow virus -1 frameshift signal.	J Am Chem Soc	2011
21909881	Optical trapping and unfolding of RNA.	Methods Mol Biol	2011
21598975	Mechanical unfolding of the beet western yellow virus -1 frameshift signal.	J Am Chem Soc	2011
21164997	Simultaneous calibration of optical tweezers spring constant and position detector response.	Opt Express	2010
21164997	Simultaneous calibration of optical tweezers spring constant and position detector response.	Opt Express	2010
19305460	Optical force model based on sequential ray tracing.	Appl Opt	2009
19305460	Optical force model based on sequential ray tracing.	Appl Opt	2009

1 - 50 of 80

Vladislav Belyy

University of California at San Francisco

Career Start Year 2010

Number of shared co-authors 0

Ignacia Echeverria

University of California san francisco

Career Start Year 2010

Number of shared co-authors 3

David R Slochower

Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California

Career Start Year 2010

Number of shared co-authors 0

Shixin Liu

The Rockefeller University

Career Start Year 2006

Number of shared co-authors 0

James C Gumbart

Georgia Institute of Technology

Career Start Year 2005

Number of shared co-authors 1

Andrew E Whitten

Institute for Molecular Bioscience, University of Queensland

Career Start Year 2004

Number of shared co-authors 2

Peter Prinsen

University of California los angeles

Career Start Year 2003

Number of shared co-authors 0

Ivaylo Ivanov

Georgia State University, GA 30302 USA Center for Diagnostics and Therapeutics

Career Start Year 2002

Number of shared co-authors 0

Peter L Freddolino

University of Michigan ann arbor

Career Start Year 2002

Number of shared co-authors 5

Greg L Hura

Lawrence Berkeley National Laboratory, University of California Santa Cruz

Career Start Year 2002

Number of shared co-authors 4

Matteo Dal Peraro

Institute of Bioengineering

Career Start Year 2001

Number of shared co-authors 5

David E Shaw

Columbia University

Career Start Year 2000

Number of shared co-authors 4

Lewyn Li

Dana-Farber Cancer Institute, Harvard Medical School

Career Start Year 2000

Number of shared co-authors 0

Michael Feig

Michigan State University

Career Start Year 1998

Number of shared co-authors 2

Nikolay V Dokholyan

Pennsylvania State University College of Medicine

Career Start Year 1998

Number of shared co-authors 4

Juan J de Pablo

University of Chicago

Career Start Year 1997

Number of shared co-authors 0

Aaron R Dinner

James Franck Institute, Institute for Biophysical Dynamics, University of Chicago

Career Start Year 1996

Number of shared co-authors 1

Gerhard Hummer

Max Planck Institute of Biophysics

Career Start Year 1994

Number of shared co-authors 4

Emad Tajkhorshid

University of Illinois at Urbana-Champaign

Career Start Year 1993

Number of shared co-authors 4

Francisco Melo

Pontificia Universidad Catolica de Chile

Career Start Year 1989

Number of shared co-authors 1

Lois Pollack

Cornell University

Career Start Year 1986

Number of shared co-authors 3

Michael K Gilson

University of California

Career Start Year 1985

Number of shared co-authors 1

Ariel Fern??ndez

University of Florida

Career Start Year 1984

Number of shared co-authors 0

Carlos Bustamante

University of California berkeley

Career Start Year 1979

Number of shared co-authors 0

David A Case

Rutgers University

Career Start Year 1977

Number of shared co-authors 4

David A Agard

University of California, USA Quantitative Biosciences Institute (QBI) san francisco

Career Start Year 1977

Number of shared co-authors 5

Charles L Brooks

University of Michigan ann arbor

Career Start Year 1974

Number of shared co-authors 1

Stephen C Harvey

University of Pennsylvania

Career Start Year 1972

Number of shared co-authors 1

Barry Honig

Columbia University Irving Medical Center

Career Start Year 1971

Number of shared co-authors 5

Martin Karplus

Harvard University

Career Start Year 1959

Number of shared co-authors 3

row(s) 1 - 30 of 30

Alexandre M J J Bonvin

Bijvoet Center for Biomolecular Research, Utrecht University

Co-authored papers 8

Panagiotis L Kastritis

Interdisciplinary Research Center HALOmem, Martin Luther University Halle-Wittenberg

Co-authored papers 7

Jo??o P G L M Rodrigues

Stanford University

Co-authored papers 5

Marc van Dijk

Co-authored papers 4

Li C Xue

Utrecht University

Co-authored papers 3

Ezgi Karaca

Dokuz Eylul University

Co-authored papers 3

Mehdi Nellen

Utrecht University

Co-authored papers 3

Anna Vangone

Roche Pharma Research and Early Development

Co-authored papers 3

Adrien S J Melquiond

Oncode Institute & Hubrecht Institute-KNAW and University Medical Center Utrecht

Co-authored papers 3

Gydo C P van Zundert

Utrecht University

Co-authored papers 3

Cunliang Geng

Co-authored papers 2

Marc Baldus

Bijvoet Center for Biomolecular Research, Utrecht University

Co-authored papers 2

Mikael Trellet

Co-authored papers 2

Marek Orzechowski

Co-authored papers 1

Ivan Anishchenko

University of Washington

Co-authored papers 1

Petras J Kundrotas

The University of Kansas

Co-authored papers 1

Eiichiro Ichiishi

International University of Health and Welfare (IUHV Hospital)

Co-authored papers 1

Anisah W Ghoorah

University of Mauritius

Co-authored papers 1

Neil J Bruce

Heidelberg Institute for Theoretical Studies (HITS)

Co-authored papers 1

Zhiwei Ma

Dalton Cardiovascular Research Center, University of Missouri

Co-authored papers 1

Dmitri Beglov

Boston University

Co-authored papers 1

Liming Qiu

Perelman School of Medicine, University of Pennsylvania

Co-authored papers 1

Artem B Mamonov

MGH/Harvard Medical School

Co-authored papers 1

Brian Jim??nez-Garc??a

Utrecht University

Co-authored papers 1

Iain H Moal

GSK Medicines Research Centre

Co-authored papers 1

Rebecca C Wade

Center for Molecular Biology (ZMBH), Heidelberg University

Co-authored papers 1

Jooyoung Lee

Korea Institute for Advanced Study

Co-authored papers 1

Bernard Maigret

Universite de Lorraine, CNRS

Co-authored papers 1

Xiaoqin Zou

Dalton Cardiovascular Research Center, University of Missouri

Co-authored papers 1

Ilya A Vakser

The University of Kansas

Co-authored papers 1

1 - 30

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