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Author Details

William J R Longabaugh
Institute for Systems Biology
2005
23
15
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36695636A cloud-based resource for genome coordinate-based exploration and large-scale analysis of chromosome aberrations and gene fusions in cancer.Genes Chromosomes Cancer2023
37999984National Cancer Institute Imaging Data Commons: Toward Transparency, Reproducibility, and Scalability in Imaging Artificial Intelligence.Radiographics2023
37832430The NCI Imaging Data Commons as a platform for reproducible research in computational pathology.Comput Methods Programs Biomed2023
36949078Interoperable slide microscopy viewer and annotation tool for imaging data science and computational pathology.Nat Commun2023
35352025The TP53 Database: transition from the International Agency for Research on Cancer to the US National Cancer Institute.Cell Death Differ2022
34185678NCI Imaging Data Commons.Cancer Res2021
33277483Systematic comparison of sea urchin and sea star developmental gene regulatory networks explains how novelty is incorporated in early development.Nat Commun2020
29983926The Cytoscape Automation app article collection.F1000Res2018
28584128Bcl11b and combinatorial resolution of cell fate in the T-cell gene regulatory network.Proc Natl Acad Sci U S A2017
29092928The ISB Cancer Genomics Cloud: A Flexible Cloud-Based Platform for Cancer Genomics Research.Cancer Res2017
27134726BioTapestry now provides a web application and improved drawing and layout tools.F1000Res2016
25232098A high-resolution network model for global gene regulation in Mycobacterium tuberculosis.Nucleic Acids Res2014
25580224The Cytoscape app article collection.F1000Res2014
21938637BioTapestry: a tool to visualize the dynamic properties of gene regulatory networks.Methods Mol Biol2012
23102059Combing the hairball with BioFabric: a new approach for visualization of large networks.BMC Bioinformatics2012
18992377Developmental gene regulatory networks in the zebrafish embryo.Biochim Biophys Acta2009
19268450A perturbation model of the gene regulatory network for oral and aboral ectoderm specification in the sea urchin embryo.Dev Biol2009
18757046Visualization, documentation, analysis, and communication of large-scale gene regulatory networks.Biochim Biophys Acta2009
19104054A gene regulatory network armature for T lymphocyte specification.Proc Natl Acad Sci U S A2008
17442700Genomic characterization of Gli-activator targets in sonic hedgehog-mediated neural patterning.Development2007
18160043A predictive model for transcriptional control of physiology in a free living cell.Cell2007
18079985Understanding the dynamic behavior of genetic regulatory networks by functional decomposition.Curr Genomics2006
15907831Computational representation of developmental genetic regulatory networks.Dev Biol2005
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Collaborators

Eric H Davidson
California Institute of Technology
Co-authored papers 4
Steve Pieper
Co-authored papers 3
Ron Kikinis
Brigham and Women's Hospital, Harvard Medical School
Co-authored papers 3
Nitin S Baliga
Institute for Systems Biology
Co-authored papers 2
Christian Lopes
University of Toronto
Co-authored papers 2
Keiichiro Ono
university of california san diego
Co-authored papers 2
Gary D Bader
University of Toronto
Co-authored papers 2
Trey Ideker (CM4AI)
University of California San Diego
Co-authored papers 2
Kalle Leinonen
Co-authored papers 2
Piet Molenaar
Academic Medical Center
Co-authored papers 2
Todd Pihl
Co-authored papers 2
Ilya Shmulevich
Institute for Systems Biology
Co-authored papers 2
Barry Demchak
University of California
Co-authored papers 2
John H Morris
University of California san francisco
Co-authored papers 2
Benno Schwikowski
Center for Bioinformatics, Institut Pasteur CNRS
Co-authored papers 2
Alexander R Pico
Institute of Data Science and Biotechnology, Gladstone Institutes
Co-authored papers 2
Weihua Zeng
Co-authored papers 1
James Christopher Bare
Institute for Systems Biology
Co-authored papers 1
Brett Settle
University of California
Co-authored papers 1
Vesteinn Thorsson
Institute for Systems Biology
Co-authored papers 1
David L Gibbs
Institute for Systems Biology
Co-authored papers 1
Tim Hull
University of California
Co-authored papers 1
Yi-Hsien Su
Institute of Cellular and Organismic Biology
Co-authored papers 1
Sheng Zhong
Peking-Tsinghua Center for Life Sciences, College of Life Sciences, Peking University
Co-authored papers 1
Richard Bonneau
Center for Computational Biology (CCB), Flatiron Institute, Simons Foundation
Co-authored papers 1
Eric Sage
University of California San Diego
Co-authored papers 1
Christopher L Plaisier
Arizona State University
Co-authored papers 1
Jason Montojo
University of Toronto
Co-authored papers 1
Ali Mortazavi
Co-authored papers 1
Oriol Guitart-Pla
Institut Pasteur
Co-authored papers 1
Release 1.2