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Author Details

Jaebum Kim
Konkuk University
2007
55
21
PMIDPaper TitleJournal TitlePublished Year
37923776A chromosome-level genome assembly of the Korean crossbred pig Nanchukmacdon (Sus scrofa).Sci Data2023
36161960Evolution of the ancestral mammalian karyotype and syntenic regions.Proc Natl Acad Sci U S A2022
35579554Generation and application of pseudo-long reads for metagenome assembly.Gigascience2022
35552439DLEB: a web application for building deep learning models in biological research.Nucleic Acids Res2022
36403483Neuroprotective effects of linear ubiquitin E3 ligase against aging-induced DNA damage and amyloid β neurotoxicity in the brain of Drosophila melanogaster.Biochem Biophys Res Commun2022
36618978Reference-based read clustering improves the <i>de novo</i> genome assembly of microbial strains.Comput Struct Biotechnol J2022
36123620msPIPE: a pipeline for the analysis and visualization of whole-genome bisulfite sequencing data.BMC Bioinformatics2022
34743693Comparative methylation and RNA-seq expression analysis in CpG context to identify genes involved in Backfat vs. Liver diversification in Nanchukmacdon Pig.BMC Genomics2021
33785872Integration of multi-omics approaches for functional characterization of muscle related selective sweep genes in Nanchukmacdon.Sci Rep2021
34951463Molecular mechanisms of embryonic tail development in the self-fertilizing mangrove killifish Kryptolebias marmoratus.Development2021
32397982TAMA: improved metagenomic sequence classification through meta-analysis.BMC Bioinformatics2020
33158084Unraveling the Genome-Wide Impact of Recombinant Baculovirus Infection in Mammalian Cells for Gene Delivery.Genes (Basel)2020
32787779Population analysis of the Korean native duck using whole-genome sequencing data.BMC Genomics2020
32868490Evolutionary and Functional Analysis of Korean Native Pig Using Single Nucleotide Polymorphisms.Mol Cells2020
30649288A near-chromosome-scale genome assembly of the gemsbok (Oryx gazella): an iconic antelope of the Kalahari desert.Gigascience2019
31751498Using INTERSPIA to Explore the Dynamics of Protein-Protein Interactions Among Multiple Species.Curr Protoc Bioinformatics2019
31454399Integrative Meta-Assembly Pipeline (IMAP): Chromosome-level genome assembler combining multiple de novo assemblies.PLoS One2019
31367745An integrated chromosome-scale genome assembly of the Masai giraffe (Giraffa camelopardalis tippelskirchi).Gigascience2019
30741379Markov chain Monte Carlo simulation of a Bayesian mixture model for gene network inference.Genes Genomics2019
30885117GMASS: a novel measure for genome assembly structural similarity.BMC Bioinformatics2019
30760546Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks.Genome Res2019
29451363The genome of the marine medaka Oryzias melastigma.Mol Ecol Resour2018
29925783Construction of Red Fox Chromosomal Fragments from the Short-Read Genome Assembly.Genes (Basel)2018
29871588mySyntenyPortal: an application package to construct websites for synteny block analysis.BMC Bioinformatics2018
30290830Reconstruction of avian ancestral karyotypes reveals differences in the evolutionary history of macro- and microchromosomes.Genome Biol2018
29746660INTERSPIA: a web application for exploring the dynamics of protein-protein interactions among multiple species.Nucleic Acids Res2018
28071692Diversity, distribution, and significance of transposable elements in the genome of the only selfing hermaphroditic vertebrate Kryptolebias marmoratus.Sci Rep2017
29230066Functional and evolutionary analysis of Korean bob-tailed native dog using whole-genome sequencing data.Sci Rep2017
28630326Reconstruction and evolutionary history of eutherian chromosomes.Proc Natl Acad Sci U S A2017
27845661Synteny Explorer: An Interactive Visualization Application for Teaching Genome Evolution.IEEE Trans Vis Comput Graph2017
27746318Phylogenetic analysis of two Plectus mitochondrial genomes (Nematoda: Plectida) supports a sister group relationship between Plectida and Rhabditida within Chromadorea.Mol Phylogenet Evol2017
26716363Omics of the marine medaka (Oryzias melastigma) and its relevance to marine environmental research.Mar Environ Res2016
27640093Evolutionary Analyses of Hanwoo (Korean Cattle)-Specific Single-Nucleotide Polymorphisms and Genes Using Whole-Genome Resequencing Data of a Hanwoo Population.Mol Cells2016
27991583Identification of disease comorbidity through hidden molecular mechanisms.Sci Rep2016
27154270Synteny Portal: a web-based application portal for synteny block analysis.Nucleic Acids Res2016
25572018Metagenome assembly through clustering of next-generation sequencing data using protein sequences.J Microbiol Methods2015
26358297Genome-wide analysis of DNA methylation in pigs using reduced representation bisulfite sequencing.DNA Res2015
26264976Corrigendum: Genome-wide adaptive complexes to underground stresses in blind mole rats Spalax.Nat Commun2015
26337547Prevertebrate Local Gene Duplication Facilitated Expansion of the Neuropeptide GPCR Superfamily.Mol Biol Evol2015
26027543FCMM: A comparative metagenomic approach for functional characterization of multiple metagenome samples.J Microbiol Methods2015
24222208PSAR-align: improving multiple sequence alignment using probabilistic sampling.Bioinformatics2014
25273068Alignathon: a competitive assessment of whole-genome alignment methods.Genome Res2014
25072168Estimating the composition of species in metagenomes by clustering of next-generation read sequences.Methods2014
24892994Genome-wide adaptive complexes to underground stresses in blind mole rats Spalax.Nat Commun2014
23307812Reference-assisted chromosome assembly.Proc Natl Acad Sci U S A2013
23673643Draft genome sequence of the Tibetan antelope.Nat Commun2013
23747275Functional analysis of the gene SCO1782 encoding Streptomyces hemolysin (S-hemolysin) in Streptomyces coelicolor M145.Toxicon2013
22751099The yak genome and adaptation to life at high altitude.Nat Genet2012
23151582Analyses of pig genomes provide insight into porcine demography and evolution.Nature2012
21576232PSAR: measuring multiple sequence alignment reliability by probabilistic sampling.Nucleic Acids Res2011
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Collaborators

Jian Ma
Co-authored papers 14
Harris A Lewin
University of California Davis
Co-authored papers 12
Guojie Zhang
University of Copenhagen, Universitetsparken 15
Co-authored papers 8
Younhee Ko
Hankuk University of Foreign Studies
Co-authored papers 6
Saurabh Sinha
Georgia Institute of Technology
Co-authored papers 5
Jun Wang
Zhongnan Hospital of Wuhan University
Co-authored papers 5
Joana Damas
Co-authored papers 4
Oliver A Ryder
Co-authored papers 4
Jian Wang
Institute of Medical Research, Northwestern Polytechnical University
Co-authored papers 3
Sandra L Rodriguez-Zas
University of Illinois at Urbana-Champaign
Co-authored papers 2
Stefan Wyder
University of Zurich
Co-authored papers 2
Oliver Niehuis
Institute of Biology I (Zoology), Albert Ludwig University
Co-authored papers 2
Hugh M Robertson
University of Illinois at Champaign-Urbana
Co-authored papers 2
Wei Zhao
Co-authored papers 2
Vera Gorbunova
University of Rochester
Co-authored papers 2
V V Solov'ev
Softberry Inc.
Co-authored papers 2
Joshua D Gibson
University of California berkeley
Co-authored papers 2
John H Werren
University of Rochester
Co-authored papers 2
Terence D Murphy
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 1
Michael E Clark
University of Rochester.
Co-authored papers 1
Dan Graur
University of Houston
Co-authored papers 1
Jacqueline A Lopez
University of Notre Dame
Co-authored papers 1
Susanne Neupert
Institute of Biology, University of Kassel
Co-authored papers 1
J??rgen Gadau
Arizona State University
Co-authored papers 1
Claude Desplan
New York University
Co-authored papers 1
Cornelis J P Grimmelikhuijzen
University of Copenhagen, Universitetsparken 15
Co-authored papers 1
Evgenia V Kriventseva
University of Geneva Medical School
Co-authored papers 1
Chris Clee
Co-authored papers 1
Lesley S Chaboub
Center for Neuroregeneration, Houston Methodist Research Institute
Co-authored papers 1
Geoffrey Okwuonu
Baylor College of Medicine
Co-authored papers 1
Release 1.2