Author details

Full Name

William R Pearson

Affiliation

University of Virginia

ORCID

Career Start Year

1974

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36482890	Comparison of detection methods and genome quality when quantifying nuclear mitochondrial insertions in vertebrate genomes.	Front Genet	2022
29870542	Bioinformatics core competencies for undergraduate life sciences education.	PLoS One	2018
27923999	Query-seeded iterative sequence similarity searching improves selectivity 5-20-fold.	Nucleic Acids Res	2017
28902397	Using SQL Databases for Sequence Similarity Searching and Analysis.	Curr Protoc Bioinformatics	2017
27010337	Finding Protein and Nucleotide Similarities with FASTA.	Curr Protoc Bioinformatics	2016
27175996	Applying, Evaluating and Refining Bioinformatics Core Competencies (An Update from the Curriculum Task Force of ISCB's Education Committee).	PLoS Comput Biol	2016
25976240	Most partial domains in proteins are alignment and annotation artifacts.	Genome Biol	2015
26334923	Protein Function Prediction: Problems and Pitfalls.	Curr Protoc Bioinformatics	2015
24170396	BLAST and FASTA similarity searching for multiple sequence alignment.	Methods Mol Biol	2014
24319146	The Catalytic Site Atlas 2.0: cataloging catalytic sites and residues identified in enzymes.	Nucleic Acids Res	2014
23749753	An introduction to sequence similarity ("homology") searching.	Curr Protoc Bioinformatics	2013
24509512	Selecting the Right Similarity-Scoring Matrix.	Curr Protoc Bioinformatics	2013
23995390	Adjusting scoring matrices to correct overextended alignments.	Bioinformatics	2013
22058127	MACiE: exploring the diversity of biochemical reactions.	Nucleic Acids Res	2012
22539666	PSI-Search: iterative HOE-reduced profile SSEARCH searching.	Bioinformatics	2012
20064877	Homologous over-extension: a challenge for iterative similarity searches.	Nucleic Acids Res	2010
20693322	RefProtDom: a protein database with improved domain boundaries and homology relationships.	Bioinformatics	2010
20307279	Improving pairwise sequence alignment accuracy using near-optimal protein sequence alignments.	BMC Bioinformatics	2010
19948773	Globally, unrelated protein sequences appear random.	Bioinformatics	2010
16891377	Exploring the relationship between sequence similarity and accurate phylogenetic trees.	Mol Biol Evol	2006
15919194	The limits of protein sequence comparison?	Curr Opin Struct Biol	2005
16399387	Phylogenies of glutathione transferase families.	Methods Enzymol	2005
16399376	Nomenclature for mammalian soluble glutathione transferases.	Methods Enzymol	2005
14978311	Sensitivity and selectivity in protein structure comparison.	Protein Sci	2004
18428739	Using relational databases for improved sequence similarity searching and large-scale genomic analyses.	Curr Protoc Bioinformatics	2004
18428723	Finding protein and nucleotide similarities with FASTA.	Curr Protoc Bioinformatics	2004
15510150	The genome of Cryptosporidium hominis.	Nature	2004
14751975	Visualization of near-optimal sequence alignments.	Bioinformatics	2004
12486119	Identification of residues in glutathione transferase capable of driving functional diversification in evolution. A novel approach to protein redesign.	J Biol Chem	2003
12824437	CRP: Cleavage of Radiolabeled Phosphoproteins.	Nucleic Acids Res	2003
12038961	Identification and characterization of GSTT3, a third murine Theta class glutathione transferase.	Biochem J	2002
12427470	Entamoeba histolytica: sequence conservation of the Gal/GalNAc lectin from clinical isolates.	Exp Parasitol	2002
12424122	Empirical determination of effective gap penalties for sequence comparison.	Bioinformatics	2002
12096132	Getting more from less: algorithms for rapid protein identification with multiple short peptide sequences.	Mol Cell Proteomics	2002
12096113	A strategy for the rapid identification of phosphorylation sites in the phosphoproteome.	Mol Cell Proteomics	2002
11590093	Training for bioinformatics and computational biology.	Bioinformatics	2001
10547837	Flexible sequence similarity searching with the FASTA3 program package.	Methods Mol Biol	2000
9854036	Gene structure, expression and chromosomal localization of murine theta class glutathione transferase mGSTT1-1.	Biochem J	1999
10368958	Generalized neighbor-joining: more reliable phylogenetic tree reconstruction.	Mol Biol Evol	1999
10452901	Evolution of protein sequences and structures.	J Mol Biol	1999
9882431	Distinctive structure of the human GSTM3 gene-inverted orientation relative to the mu class glutathione transferase gene cluster.	Arch Biochem Biophys	1999
10207159	Panning for genes--A visual strategy for identifying novel gene orthologs and paralogs.	Genome Res	1999
9733729	Rapid identification of protein phosphatase 1-binding proteins by mixed peptide sequencing and data base searching. Characterization of a novel holoenzymic form of protein phosphatase 1.	J Biol Chem	1998
9452477	Characterization of the human class Mu glutathione S-transferase gene cluster and the GSTM1 deletion.	J Biol Chem	1998
9514730	Empirical statistical estimates for sequence similarity searches.	J Mol Biol	1998
9403055	Comparison of DNA sequences with protein sequences.	Genomics	1997
9283747	Identifying distantly related protein sequences.	Comput Appl Biosci	1997
9278064	Aligning a DNA sequence with a protein sequence.	J Comput Biol	1997
8743688	Effective protein sequence comparison.	Methods Enzymol	1996
7584448	A new approach to primer selection in polymerase chain reaction experiments.	Proc Int Conf Intell Syst Mol Biol	1995

1 - 50 of 92

Iddo Friedberg

Iowa State University

Career Start Year 1997

Number of shared co-authors 1

Stefano Toppo

University of Padova

Career Start Year 1996

Number of shared co-authors 2

Lukasz Jaroszewski

University of California Riverside School of Medicine

Career Start Year 1995

Number of shared co-authors 2

Alex Bateman

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 1995

Number of shared co-authors 5

Richa Agarwala

National Center for Biotechnology Information, National Institutes of Health

Career Start Year 1995

Number of shared co-authors 2

Sandra W Clifton

Garvan Institute of Medical Research

Career Start Year 1994

Number of shared co-authors 2

Terry Gaasterland

Scripps Institution of Oceanography, University of California San Diego

Career Start Year 1994

Number of shared co-authors 3

Steven E Brenner

University of California berkeley

Career Start Year 1994

Number of shared co-authors 3

Inna Dubchak

Lawrence Berkeley National Laboratory

Career Start Year 1993

Number of shared co-authors 1

Martijn A Huynen

Radboud University Medical Centre Nijmegen

Career Start Year 1992

Number of shared co-authors 0

Erik L L Sonnhammer

Stockholm University

Career Start Year 1992

Number of shared co-authors 0

Jaap Heringa

VU University Amsterdam

Career Start Year 1991

Number of shared co-authors 0

Arcady Mushegian

National Science Foundation

Career Start Year 1991

Number of shared co-authors 3

Alexander J Ropelewski

Carnegie Mellon University

Career Start Year 1991

Number of shared co-authors 0

Asaf Salamov

US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory

Career Start Year 1991

Number of shared co-authors 2

Miguel A Andrade-Navarro

Institute of Organismic and Molecular Evolution, Johannes Gutenberg University

Career Start Year 1991

Number of shared co-authors 0

Dietlind L Gerloff

Foundation for Applied Molecular Evolution (FfAME)

Career Start Year 1991

Number of shared co-authors 0

Peer Bork

University of Wurzburg

Career Start Year 1989

Number of shared co-authors 4

Mark D Adams

Case Western Reserve University School of Medicine

Career Start Year 1989

Number of shared co-authors 0

Owen White

Institute for Genome Sciences, University of Maryland School of Medicine

Career Start Year 1988

Number of shared co-authors 1

Denis C Shields

Conway Institute of Biomolecular and Biomedical Research, University College Dublin

Career Start Year 1987

Number of shared co-authors 1

Pavel A Pevzner

University of California

Career Start Year 1987

Number of shared co-authors 0

Adam Godzik

University of California Riverside

Career Start Year 1987

Number of shared co-authors 3

Michal Linial

Institute of Life Sciences, The Hebrew University of Jerusalem

Career Start Year 1986

Number of shared co-authors 1

Liisa Holm

Institute of Biotechnology, University of Helsinki

Career Start Year 1986

Number of shared co-authors 1

Bruce W Birren

Broad Institute of MIT and Harvard

Career Start Year 1983

Number of shared co-authors 3

John M Hancock

the University of Texas Health Science Center at Houston

Career Start Year 1982

Number of shared co-authors 1

Neil D Clarke

Yale-NUS College Singapore

Career Start Year 1981

Number of shared co-authors 0

Chris Sander

Broad Institute of MIT and Harvard

Career Start Year 1979

Number of shared co-authors 2

Michael S Waterman

Biocomplexity Institute and Initiative

Career Start Year 1977

Number of shared co-authors 0

row(s) 1 - 30 of 30

Aaron J Mackey

HemoShear Therapeutics LLC

Co-authored papers 8

Webb Miller

Co-authored papers 4

Eric H Davidson

California Institute of Technology

Co-authored papers 3

Weizhong Li

J. Craig Venter Institute

Co-authored papers 2

Gemma L Holliday

European Bioinformatics Institute (EMBL-EBI)

Co-authored papers 2

Rodrigo Lopez

Co-authored papers 2

Michael Smoot

University of California

Co-authored papers 2

Perry L Miller

Clinical Epidemiology Research Center (CERC), VA Connecticut Healthcare System

Co-authored papers 1

Jason Williams

Co-authored papers 1

David E Neal

University of Oxford, John Radcliffe Hospital

Co-authored papers 1

Nicola Mulder

University of Cape Town

Co-authored papers 1

James W Posakony

Co-authored papers 1

Myrna G Serrano

Virginia Commonwealth University.

Co-authored papers 1

Gordon S Rule

Carnegie Mellon University

Co-authored papers 1

Julius O B Jacobsen

William Harvey Research Institute, Queen Mary University of London

Co-authored papers 1

Sarah C R Elgin

Co-authored papers 1

Justin T Reese

Lawrence Berkeley National Laboratory

Co-authored papers 1

Brandi L Cantarel

University of Texas Southwestern Medical Center

Co-authored papers 1

Predrag Radivojac

Indiana University

Co-authored papers 1

Todd Smith

Co-authored papers 1

Robert F Murphy

Carnegie Mellon University

Co-authored papers 1

Prakash M Nadkarni

College of Nursing, University of Iowa Hospitals and Clinics

Co-authored papers 1

Gregory A Buck

Virginia Commonwealth University.

Co-authored papers 1

Vivek Kapur

Huck Institutes of Life Sciences, The Pennsylvania State University, University Park

Co-authored papers 1

Gabriella Rustici

University of Cambridge

Co-authored papers 1

Richard C Strange

Co-authored papers 1

William A Petri

University of Virginia

Co-authored papers 1

Daniel Mietchen

Institute of Biology, Freie Universitat Berlin

Co-authored papers 1

Benjamin L Moore

Illumina Cambridge Ltd

Co-authored papers 1

Yury Patskovsky

New York University Grossman School of Medicine

Co-authored papers 1

1 - 30

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