Author details

Full Name

Yuko Yoshinaga

Affiliation

ORCID

Career Start Year

1999

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37488708	Expression quantitative trait loci mapping identified PtrXB38 as a key hub gene in adventitious root development in Populus.		2023
36250890	High-resolution mapping reveals hotspots and sex-biased recombination in Populus trichocarpa.	G3: Genes, Genomes, Genetics	2023
36520390	Tissue Cultivation, Preparation, and Extraction of High Molecular Weight DNA for Single-Molecule Genome Sequencing of Plant-Associated Fungi.		2023
36828814	A thousand-genome panel retraces the global spread and adaptation of a major fungal crop pathogen.		2023
36648238	Genomic prediction of switchgrass winter survivorship across diverse lowland populations.		2023
37018475	Transcriptome and DNA methylome divergence of inflorescence development between 2 ecotypes in Panicum hallii.		2023
36811946	Speciation Underpinned by Unexpected Molecular Diversity in the Mycorrhizal Fungal Genus Pisolithus.	Mol Biol Evol	2023
36562730	The Chlamydomonas Genome Project, version 6: Reference assemblies for mating-type plus and minus strains reveal extensive structural mutation in the laboratory.	Plant Cell	2023
35298644	Multiplex knockout of trichome-regulating MYB duplicates in hybrid poplar using a single gRNA.	Plant Physiol	2022
35962045	Author Correction: Comparative and demographic analysis of orang-utan genomes.	Nature	2022
35442079	Near-Complete Genome Sequence of Zygosaccharomyces rouxii NRRL Y-64007, a Yeast Capable of Growing on Lignocellulosic Hydrolysates.	Microbiol Resour Announc	2022
35441688	Genetic mapping and prediction of flowering time and plant height in a maize Stiff Stalk MAGIC population.	Genetics	2022
35986497	The landscape of Chlamydomonas histone H3 lysine 4 methylation reveals both constant features and dynamic changes during the diurnal cycle.	Plant Journal	2022
34824476	Persistence and plasticity in bacterial gene regulation.	Nat Methods	2021
34275202	Genomic variation within the maize stiff-stalk heterotic germplasm pool.	Plant Genome	2021
34006627	DOE JGI Metagenome Workflow.	mSystems	2021
33505029	Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass.	Nature	2021
34131180	Omics analyses and biochemical study of Phlebiopsis gigantea elucidate its degradation strategy of wood extractives.	Scientific Reports	2021
34795375	Long-read metagenomics of soil communities reveals phylum-specific secondary metabolite dynamics.	Commun Biol	2021
31941672	Deficiency in ZMPSTE24 and resulting farnesyl-prelamin A accumulation only modestly affect mouse adipose tissue stores.	Journal of Lipid Research	2020
31019518	The Genetic Architecture of Shoot and Root Trait Divergence Between Mesic and Xeric Ecotypes of a Perennial Grass.	Frontiers in Plant Science	2019
31806758	Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses.	Proc Natl Acad Sci U S A	2019
31091459	High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types.	Cell Rep	2019
31133004	A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism.	BMC Genomics	2019
30523281	The genomic landscape of molecular responses to natural drought stress in Panicum hallii.	Nat Commun	2018
29876807	Genome Sequencing.	Methods in Molecular Biology	2018
26659563	Comparative Genomics of Early-Diverging Mushroom-Forming Fungi Provides Insights into the Origins of Lignocellulose Decay Capabilities.	Molecular Biology and Evolution	2016
27250540	Lineage-specific chromatin signatures reveal a regulator of lipid metabolism in microalgae.		2015
24926052	Draft Genome Sequence of a Rare Smut Relative, Tilletiaria anomala UBC 951.	Genome Announcements	2014
25347472	Sphingosine-1-phosphate lyase downregulation promotes colon carcinogenesis through STAT3-activated microRNAs.	Journal of Clinical Investigation	2014
24634820	Lipin-1 and lipin-3 together determine adiposity in vivo.	Molecular Metabolism	2014
24672053	Reciprocal knock-in mice to investigate the functional redundancy of lamin B1 and lamin B2.	Mol Biol Cell	2014
23650370	Farnesylation of lamin B1 is important for retention of nuclear chromatin during neuronal migration.	Proc Natl Acad Sci U S A	2013
23077570	Compromised mitochondrial fatty acid synthesis in transgenic mice results in defective protein lipoylation and energy disequilibrium.	PLoS ONE	2012
22968824	The mammalian gene function resource: the International Knockout Mouse Consortium.	Mamm Genome	2012
22781001	Sphingosine-1-phosphate lyase expression in embryonic and adult murine tissues.	J Lipid Res	2012
22570807	A resource for the conditional ablation of microRNAs in the mouse.	Cell Rep	2012
22908270	Mouse lipin-1 and lipin-2 cooperate to maintain glycerolipid homeostasis in liver and aging cerebellum.	Proc Natl Acad Sci U S A	2012
21976703	Deficiencies in lamin B1 and lamin B2 cause neurodevelopmental defects and distinct nuclear shape abnormalities in neurons.	Mol Biol Cell	2011
21270892	Comparative and demographic analysis of orang-utan genomes.	Nature	2011
21343340	Targeted disruption of the idol gene alters cellular regulation of the low-density lipoprotein receptor by sterols and liver x receptor agonists.	Molecular and Cellular Biology	2011
21659336	An absence of both lamin B1 and lamin B2 in keratinocytes has no effect on cell proliferation or the development of skin and hair.	Human Molecular Genetics	2011
19251627	Mutations in the FUS/TLS gene on chromosome 16 cause familial amyotrophic lateral sclerosis.	Science	2009
19218456	Massively parallel sequencing identifies the gene Megf8 with ENU-induced mutation causing heterotaxy.	Proc Natl Acad Sci U S A	2009
18596956	Marking embryonic stem cells with a 2A self-cleaving peptide: a NKX2-5 emerald GFP BAC reporter.	PLoS One	2008
17571346	Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.	Nature	2007
17540169	Downregulation of death-associated protein kinase 1 (DAPK1) in chronic lymphocytic leukemia.	Cell	2007
16728641	A regulatory SNP causes a human genetic disease by creating a new transcriptional promoter.	Science	2006
11076998	Oxidative damage and induced mutations in m13mp2 phage DNA exposed to N-nitrosopyrrolidine with UVA radiation.	Mutagenesis	2000
10373312	Identification of Rab3A GTPase as an acrosome-associated small GTP-binding protein in rat sperm.	Developmental Biology	1999