Author details

Full Name

Matthew Z DeMaere

Affiliation

ORCID

Career Start Year

2001

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36972309	Rhometa: Population recombination rate estimation from metagenomic read datasets.		2023
37675998	Phylogenomic analysis of a global collection of ST38: evidence of interspecies and environmental transmission?		2023
37891154	Coral endosymbiont growth is enhanced by metabolic interactions with bacteria.		2023
34370660	Post-weaning shifts in microbiome composition and metabolism revealed by over 25â¿¿000 pig gut metagenome-assembled genomes.	Microbial genomics	2021
34080630	A large-scale metagenomic survey dataset of the post-weaning piglet gut lumen.	GigaScience	2021
34634030	qc3C: Reference-free quality control for Hi-C sequencing data.	PLoS Computational Biology	2021
32029559	Metagenomic Hi-C of a Healthy Human Fecal Microbiome Transplant Donor.	Microbiology Resource Announcements	2020
30885788	Identification of a novel lineage of plasmids within phylogenetically diverse subclades of IncHI2-ST1 plasmids.	Plasmid	2019
30303480	Australian porcine clonal complex 10 (CC10) Escherichia coli belong to multiple sublineages of a highly diverse global CC10 phylogeny.	Microbial genomics	2019
30808380	bin3C: exploiting Hi-C sequencing data to accurately resolve metagenome-assembled genomes.		2019
30805030	High contiguity genome sequence of a multidrug-resistant hospital isolate of .	Gut Pathogens	2019
30736849	CAMISIM: simulating metagenomes and microbial communities.	Microbiome	2019
29149264	Sim3C: simulation of Hi-C and Meta3C proximity ligation sequencing technologies.	GigaScience	2018
29925429	Genomic variation and biogeography of Antarctic haloarchaea.	Microbiome	2018
28967888	Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.	Nat Methods	2017
28948110	Evaluation of ddRADseq for reduced representation metagenome sequencing.	PeerJ	2017
27843713	Deconvoluting simulated metagenomes: the performance of hard- and soft- clustering algorithms applied to metagenomic chromosome conformation capture (3C).	PeerJ	2016
26971047	Comparative genomic analysis of toxin-negative strains of Clostridium difficile from humans and animals with symptoms of gastrointestinal disease.	BMC Microbiology	2016
24553470	Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaea.	ISME Journal	2014
23126454	The role of planktonic Flavobacteria in processing algal organic matter in coastal East Antarctica revealed using metagenomics and metaproteomics.	Environmental Microbiology	2013
24082106	High level of intergenera gene exchange shapes the evolution of haloarchaea in an isolated Antarctic lake.	Proc Natl Acad Sci U S A	2013
23062173	Key microbial drivers in Antarctic aquatic environments.	FEMS Microbiology Reviews	2013
23199136	Biogeographic partitioning of Southern Ocean microorganisms revealed by metagenomics.	Environ Microbiol	2013
23619305	Metagenomic insights into strategies of carbon conservation and unusual sulfur biogeochemistry in a hypersaline Antarctic lake.	ISME Journal	2013
22534610	A metaproteomic assessment of winter and summer bacterioplankton from Antarctic Peninsula coastal surface waters.	ISME J	2012
22806143	Global biogeography of SAR11 marine bacteria.	Mol Syst Biol	2012
21775307	Simple high-throughput annotation pipeline (SHAP).		2011
21444812	Virophage control of antarctic algal host-virus dynamics.	Proc Natl Acad Sci U S A	2011
21124488	An integrative study of a meromictic lake ecosystem in Antarctica.	ISME J	2011
20237513	Metaproteogenomic analysis of a dominant green sulfur bacterium from Ace Lake, Antarctica.	ISME J	2010
20520651	Functional genomic signatures of sponge bacteria reveal unique and shared features of symbiosis.	ISME J	2010
19805210	The genomic basis of trophic strategy in marine bacteria.	Proc Natl Acad Sci U S A	2009
19404327	The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: the role of genome evolution in cold adaptation.	ISME J	2009
17187352	Metagenomic studies reveal the critical and wide-ranging ecological importance of uncultivated Archaea: the role of ammonia oxidizers.	BioEssays	2007
14613939	The intracellular chloride ion channel protein CLIC1 undergoes a redox-controlled structural transition.	Journal of Biological Chemistry	2004
11551966	Crystal structure of a soluble form of the intracellular chloride ion channel CLIC1 (NCC27) at 1.4-A resolution.	Journal of Biological Chemistry	2001