Skip to Main Content

Author Details

Daniel J Park
Broad Institute of MIT and Harvard
2006
69
37
PMIDPaper TitleJournal TitlePublished Year
37946059Author Correction: Multiplexed CRISPR-based microfluidic platform for clinical testing of respiratory viruses and identification of SARS-CoV-2 variants.Nat Med2024
36299420Development of an amplicon-based sequencing approach in response to the global emergence of human monkeypox virus.medRxiv2023
37542071Metagenomic surveillance uncovers diverse and novel viral taxa in febrile patients from Nigeria.Nat Commun2023
37873325Inferring Viral Transmission Pathways from Within-Host Variation.medRxiv2023
37310918Development of an amplicon-based sequencing approach in response to the global emergence of mpox.PLoS Biol2023
37428142Accelerating bioinformatics implementation in public health.Microb Genom2023
36656774The 2022 RSV surge was driven by multiple viral lineages.medRxiv2023
36812457Viral Lineages in the 2022 RSV Surge in the United States.N Engl J Med2023
36781860Emergence and spread of two SARS-CoV-2 variants of interest in Nigeria.Nat Commun2023
36732505High-depth sequencing characterization of viral dynamics across tissues in fatal COVID-19 reveals compartmentalized infection.Nat Commun2023
35051367Transmission from vaccinated individuals in a large SARS-CoV-2 Delta variant outbreak.Cell2022
35480627Comparative transmissibility of SARS-CoV-2 variants Delta and Alpha in New England, USA.Cell Rep Med2022
35608456Analysis of 6.4 million SARS-CoV-2 genomes identifies mutations associated with fitness.Science2022
36198312Multimodal surveillance of SARS-CoV-2 at a university enables development of a robust outbreak response framework.Med2022
36093336Benchmark datasets for SARS-CoV-2 surveillance bioinformatics.PeerJ2022
35130561Multiplexed CRISPR-based microfluidic platform for clinical testing of respiratory viruses and identification of SARS-CoV-2 variants.Nat Med2022
34907347Synthetic DNA spike-ins (SDSIs) enable sample tracking and detection of inter-sample contamination in SARS-CoV-2 sequencing workflows.Nat Microbiol2022
33303686Phylogenetic analysis of SARS-CoV-2 in Boston highlights the impact of superspreading events.Science2021
33758855DNA spike-ins enable confident interpretation of SARS-CoV-2 genomic data from amplicon-based sequencing.bioRxiv2021
34704102Evidence of transmission from fully vaccinated individuals in a large outbreak of the SARS-CoV-2 Delta variant in Provincetown, Massachusetts.medRxiv2021
34642698Comparative transmissibility of SARS-CoV-2 variants Delta and Alpha in New England, USA.medRxiv2021
34465023Enhanced Virus Detection and Metagenomic Sequencing in Patients with Meningitis and Encephalitis.mBio2021
34452470The Origins and Future of Sentinel: An Early-Warning System for Pandemic Preemption and Response.Viruses2021
34351882Outbreak of SARS-CoV-2 Infections, Including COVID-19 Vaccine Breakthrough Infections, Associated with Large Public Gatherings - Barnstable County, Massachusetts, July 2021.MMWR Morb Mortal Wkly Rep2021
32228566Amplicon deep sequencing of kelch13 in Plasmodium falciparum isolates from Senegal.Malar J2020
32045407Combining genomics and epidemiology to track mumps virus transmission in the United States.PLoS Biol2020
33172455Molecular epidemiology of Plasmodium falciparum by multiplexed amplicon deep sequencing in Senegal.Malar J2020
33094116Powassan Virus Neuropathology and Genomic Diversity in Patients With Fatal Encephalitis.Open Forum Infect Dis2020
32807807Deployable CRISPR-Cas13a diagnostic tools to detect and report Ebola and Lassa virus cases in real-time.Nat Commun2020
32869040Phylogenetic analysis of SARS-CoV-2 in the Boston area highlights the role of recurrent importation and superspreading events.medRxiv2020
30381486Metagenomic Sequencing of HIV-1 in the Blood and Female Genital Tract Reveals Little Quasispecies Diversity during Acute Infection.J Virol2019
31398336Benchmarking Metagenomics Tools for Taxonomic Classification.Cell2019
30718881Capturing sequence diversity in metagenomes with comprehensive and scalable probe design.Nat Biotechnol2019
29536737Negative Selection by Spiral Inertial Microfluidics Improves Viral Recovery and Sequencing from Blood.Anal Chem2018
30332564Genomic Analysis of Lassa Virus during an Increase in Cases in Nigeria in 2018.N Engl J Med2018
28538723Genomic epidemiology reveals multiple introductions of Zika virus into the United States.Nature2017
28405027Virus genomes reveal factors that spread and sustained the Ebola epidemic.Nature2017
28538734Zika virus evolution and spread in the Americas.Nature2017
27402779An Outbreak of Ebola Virus Disease in the Lassa Fever Zone.J Infect Dis2016
27377746Ebola Virus Epidemiology and Evolution in Nigeria.J Infect Dis2016
27516592Comment on "Mutation rate and genotype variation of Ebola virus from Mali case sequences".Science2016
25604787Evaluation of the potential impact of Ebola virus genomic drift on the efficacy of sequence-based candidate therapeutics.mBio2015
26488565Genetic Diversity and Protective Efficacy of the RTS,S/AS01 Malaria Vaccine.N Engl J Med2015
26651942Evolution and Spread of Ebola Virus in Liberia, 2014-2015.Cell Host Microbe2015
26079255Monitoring of Ebola Virus Makona Evolution through Establishment of Advanced Genomic Capability in Liberia.Emerg Infect Dis2015
26091036Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone.Cell2015
25781890Development of a single nucleotide polymorphism barcode to genotype Plasmodium vivax infections.PLoS Negl Trop Dis2015
24472178Analysis of pfhrp2 genetic diversity in Senegal and implications for use of rapid diagnostic tests.Malar J2014
25421896Nomenclature- and database-compatible names for the two Ebola virus variants that emerged in Guinea and the Democratic Republic of the Congo in 2014.Viruses2014
25256396Filovirus RefSeq entries: evaluation and selection of filovirus type variants, type sequences, and names.Viruses2014
  • 1 - 50 of 69

Recommended Authors

University of Louisville
Career Start Year 2016
Number of shared co-authors 0
Yale School of Public Health
Career Start Year 2016
Number of shared co-authors 10
University of California San Francisco
Career Start Year 2016
Number of shared co-authors 0
David Geffen School of Medicine, University of California los angeles
Career Start Year 2015
Number of shared co-authors 1
University of Adelaide, Australia Environment Institute
Career Start Year 2014
Number of shared co-authors 0
Yale School of Medicine, USA Instituto Todos pela Saude
Career Start Year 2013
Number of shared co-authors 12
Institute for Genome Sciences, University of Maryland School of Medicine
Career Start Year 2013
Number of shared co-authors 0
College of Health Sciences, Makerere University
Career Start Year 2013
Number of shared co-authors 0
the Infectious Diseases Institute, College of Health Sciences, Makerere University
Career Start Year 2012
Number of shared co-authors 1
Biodiversity Research Center, Taiwan Institute for Comparative Genomics
Career Start Year 2011
Number of shared co-authors 2
Unidade de Genomica Computacional Darcy Fontoura de Almeida
Career Start Year 2011
Number of shared co-authors 5
University of Hohenheim
Career Start Year 2010
Number of shared co-authors 0
Eck Institute for Global Health, University of Notre Dame
Career Start Year 2009
Number of shared co-authors 0
Brigham Young University
Career Start Year 2009
Number of shared co-authors 5
Instituto de Investigacion Sanitaria de Santiago
Career Start Year 2009
Number of shared co-authors 0
University of Washington Medical Center
Career Start Year 2008
Number of shared co-authors 11
University of Padova
Career Start Year 2008
Number of shared co-authors 1
University of North Carolina at Chapel Hill
Career Start Year 2006
Number of shared co-authors 1
University of North Carolina at Chapel Hill
Career Start Year 2006
Number of shared co-authors 1
Stanford University
Career Start Year 2006
Number of shared co-authors 0
Fred Hutchinson Cancer Center
Career Start Year 2004
Number of shared co-authors 9
University of Maryland
Career Start Year 2000
Number of shared co-authors 0
Earlham Institute
Career Start Year 2000
Number of shared co-authors 2
King Abdullah University of Science and Technology
Career Start Year 1997
Number of shared co-authors 2
National Institute of Allergy and Infectious Diseases, National Institutes of Health
Career Start Year 1996
Number of shared co-authors 9
Institute of Endemic Diseases, University of Khartoum
Career Start Year 1994
Number of shared co-authors 3
University of California San Francisco
Career Start Year 1994
Number of shared co-authors 8
Center for Genomics and Systems Biology
Career Start Year 1993
Number of shared co-authors 3
University of California-San Francisco
Career Start Year 1991
Number of shared co-authors 17
London School of Hygiene and Tropical Medicine
Career Start Year 1989
Number of shared co-authors 4

Collaborators

Harvard University
Co-authored papers 53
Broad Institute of Massachusetts Institute of Technology (MIT) and Harvard
Co-authored papers 33
The Broad Institute
Co-authored papers 17
Co-authored papers 14
Tulane University School of Medicine
Co-authored papers 12
The Scripps Research Institute
Co-authored papers 10
The Center for Genome Architecture, Baylor College of Medicine
Co-authored papers 8
Hinton State Laboratory Institute
Co-authored papers 7
National Institute of Allergy and Infectious Diseases, National Institutes of Health
Co-authored papers 7
Institute of Ecology and Evolution, University of Edinburgh
Co-authored papers 7
Yale School of Public Health
Co-authored papers 6
Princeton University
Co-authored papers 6
Broad Institute of MIT and Harvard
Co-authored papers 6
Tulane University
Co-authored papers 6
Co-authored papers 6
Harvard T.H. Chan School of Public Health
Co-authored papers 6
Co-authored papers 6
Co-authored papers 5
Vanderbilt-Ingram Cancer Center, Vanderbilt University
Co-authored papers 5
University of Massachusetts Medical School
Co-authored papers 5
Broad Institute of Harvard and the Massachusetts Institute of Technology
Co-authored papers 5
Yale School of Public Health
Co-authored papers 4
Massachusetts General Hospital
Co-authored papers 4
University of Maine
Co-authored papers 3
Broad Institute of MIT and Harvard.
Co-authored papers 3
University of Nebraska Medical Center
Co-authored papers 3
Co-authored papers 3
Sydney Institute for Infectious Diseases, The University of Sydney
Co-authored papers 3
Co-authored papers 2
Yale University School of Medicine
Co-authored papers 2