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Author Details

Stephen G Oliver
University of Cambridge
1976
312
66
PMIDPaper TitleJournal TitlePublished Year
37266990A panoramic view of the genomic landscape of the genus <i>Streptomyces</i>.Microb Genom2023
34638137The Neighborhood of the Spike Gene Is a Hotspot for Modular Intertypic Homologous and Nonhomologous Recombination in Coronavirus Genomes.Mol Biol Evol2022
35573743Combination of Genome-Scale Models and Bioreactor Dynamics to Optimize the Production of Commodity Chemicals.Front Mol Biosci2022
35458441Comparative Analysis of SARS-CoV-2 Variants of Concern, Including Omicron, Highlights Their Common and Distinctive Amino Acid Substitution Patterns, Especially at the Spike ORF.Viruses2022
36144322A Comparative Analysis of the Core Proteomes within and among the <i>Bacillus subtilis</i> and <i>Bacillus cereus</i> Evolutionary Groups Reveals the Patterns of Lineage- and Species-Specific Adaptations.Microorganisms2022
35904412The future of yeast research.Microbiology (Reading)2022
35100366Fission stories: using PomBase to understand Schizosaccharomyces pombe biology.Genetics2022
35062282The Remarkable Evolutionary Plasticity of Coronaviruses by Mutation and Recombination: Insights for the COVID-19 Pandemic and the Future Evolutionary Paths of SARS-CoV-2.Viruses2022
35142857From Petri Plates to Petri Nets, a revolution in yeast biology.FEMS Yeast Res2022
34903049Yeast Double Transporter Gene Deletion Library for Identification of Xenobiotic Carriers in Low or High Throughput.mBio2021
32752999A unifying modelling formalism for the integration of stoichiometric and kinetic models.J R Soc Interface2020
30503867The subcellular organisation of Saccharomyces cerevisiae.Curr Opin Chem Biol2019
33654815A Protocol to Map the Spatial Proteome Using HyperLOPIT in <i>Saccharomyces cerevisiae</i>.Bio Protoc2019
32214675Flexible Nets: a modeling formalism for dynamic systems with uncertain parameters.Discret Event Dyn Syst2019
31602611Mapping the Saccharomyces cerevisiae Spatial Proteome with High Resolution Using hyperLOPIT.Methods Mol Biol2019
31602602Yeast Systems Biology: The Continuing Challenge of Eukaryotic Complexity.Methods Mol Biol2019
31429849Metabolic response to Parkinson's disease recapitulated by the haploinsufficient diploid yeast cells hemizygous for the adrenodoxin reductase gene.Mol Omics2019
31504783Low complexity regions in the proteins of prokaryotes perform important functional roles and are highly conserved.Nucleic Acids Res2019
30712286Enhancing the functionality of a microscale bioreactor system as an industrial process development tool for mammalian perfusion culture.Biotechnol Bioeng2019
31119388Metaheuristic approaches in biopharmaceutical process development data analysis.Bioprocess Biosyst Eng2019
30938578Hidden in plain sight: what remains to be discovered in the eukaryotic proteome?Open Biol2019
30937517High-energy guanine nucleotides as a signal capable of linking growth to cellular energy status via the control of gene transcription.Curr Genet2019
30753445Transcriptional regulation of the genes involved in protein metabolism and processing in Saccharomyces cerevisiae.FEMS Yeast Res2019
30578666Extension of the yeast metabolic model to include iron metabolism and its use to estimate global levels of iron-recruiting enzyme abundance from cofactor requirements.Biotechnol Bioeng2019
30321395PomBase 2018: user-driven reimplementation of the fission yeast database provides rapid and intuitive access to diverse, interconnected information.Nucleic Acids Res2019
30625146Correction: esyN: Network Building, Sharing and Publishing.PLoS One2019
30670615Determination of the Global Pattern of Gene Expression in Yeast Cells by Intracellular Levels of Guanine Nucleotides.mBio2019
30617419A heuristic approach to handling missing data in biologics manufacturing databases.Bioprocess Biosyst Eng2019
29348637Plasmodium dihydrofolate reductase is a second enzyme target for the antimalarial action of triclosan.Sci Rep2018
30458881Saccharomyces cerevisiae adapted to grow in the presence of low-dose rapamycin exhibit altered amino acid metabolism.Cell Commun Signal2018
30267565Process development for the continuous production of heterologous proteins by the industrial yeast, Komagataella phaffii.Biotechnol Bioeng2018
30507938TAMMiCol: Tool for analysis of the morphology of microbial colonies.PLoS Comput Biol2018
29642881Antiplasmodial and trypanocidal activity of violacein and deoxyviolacein produced from synthetic operons.BMC Biotechnol2018
29354285Handling variability and incompleteness of biological data by flexible nets: a case study for Wilson disease.NPJ Syst Biol Appl2018
29662092Diffusion-Limited Growth of Microbial Colonies.Sci Rep2018
29394344Evaluation of the ability of commercial wine yeasts to form biofilms (mats) and adhere to plastic: implications for the microbiota of the winery environment.FEMS Microbiol Ecol2018
28628896Cholinergic neuron gene expression differences captured by translational profiling in a mouse model of Alzheimer's disease.Neurobiol Aging2017
31305629Erratum: CamOptimus: a tool for exploiting complex adaptive evolution to optimise experiments and processes in biotechnology.Microbiology (Reading)2017
28250014The Pivotal Role of Protein Phosphorylation in the Control of Yeast Central Metabolism.G3 (Bethesda)2017
28327990Estimating the total number of phosphoproteins and phosphorylation sites in eukaryotic proteomes.Gigascience2017
28396410Spinal motor neuron protein supersaturation patterns are associated with inclusion body formation in ALS.Proc Natl Acad Sci U S A2017
28954849Quantifying the dominant growth mechanisms of dimorphic yeast using a lattice-based model.J R Soc Interface2017
28743817Bacterial Signaling Nucleotides Inhibit Yeast Cell Growth by Impacting Mitochondrial and Other Specifically Eukaryotic Functions.mBio2017
28691262Metabolic modeling to identify engineering targets for Komagataella phaffii: The effect of biomass composition on gene target identification.Biotechnol Bioeng2017
28635591CamOptimus: a tool for exploiting complex adaptive evolution to optimize experiments and processes in biotechnology.Microbiology (Reading)2017
26235058Alzheimer's as a Systems-Level Disease Involving the Interplay of Multiple Cellular Networks.Methods Mol Biol2016
26411869CLUSTERnGO: a user-defined modelling platform for two-stage clustering of time-series data.Bioinformatics2016
26443872Systems Biology of Alzheimer's Disease. Preface.Methods Mol Biol2016
27695392The metabolome 18 years on: a concept comes of age.Metabolomics2016
27923067Chronological Lifespan in Yeast Is Dependent on the Accumulation of Storage Carbohydrates Mediated by Yak1, Mck1 and Rim15 Kinases.PLoS Genet2016
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Collaborators

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Novo Nordisk Foundation Centre for Biosustainability, Technical University of Denmark
Co-authored papers 32
Norman W Paton
Co-authored papers 20
Daniela Delneri
Co-authored papers 15
Valerie Wood
University of Cambridge
Co-authored papers 11
Kathryn S Lilley
University of Cambridge
Co-authored papers 10
Antonia Lock
University College London
Co-authored papers 9
Midori A Harris
University of Cambridge
Co-authored papers 9
Kim Rutherford
University of Cambridge
Co-authored papers 8
Neil Swainston
Institute of Systems, University of Liverpool
Co-authored papers 7
J??rg B??hler
University College London
Co-authored papers 7
Erich Bornberg-Bauer
Institute for Evolution and Biodiversity, University of Munster
Co-authored papers 5
Chris F Taylor
European Molecular Biology Laboratory- European Bioinformatics Institute
Co-authored papers 5
Andy Brass
Co-authored papers 5
Robert J Beynon
Co-authored papers 5
Mark D McDowall
European Bioinformatics Institute
Co-authored papers 4
Larisa N Soldatova
University of London
Co-authored papers 4
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Chalmers University of Technology
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Intikhab Alam
College of Life Sciences
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Ruedi Aebersold
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 3
Paul Kersey
European Bioinformatics Institute
Co-authored papers 3
Hans-Werner Mewes
Co-authored papers 3
Rolf Apweiler
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 3
Henning Hermjakob
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 3
Nigel Hardy
Co-authored papers 3
Brenda J Andrews
University of Toronto
Co-authored papers 3
Daniel M Staines
European Bioinformatics Institute
Co-authored papers 3
Evangelos Simeonidis
Institute for Systems Biology
Co-authored papers 3
Carole Goble
University of Manchester
Co-authored papers 3
Isabelle Colson
North West Cancer Research Institute, Bangor University
Co-authored papers 2
Jacqueline Hayles
The Francis Crick Institute
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Release 1.2