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Author Details

Christian M Zmasek
J. Craig Venter Institute
2001
34
23
PMIDPaper TitleJournal TitlePublished Year
36350631Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR.Nucleic Acids Res2023
36353215Early detection of emerging SARS-CoV-2 variants of interest for experimental evaluation.Front Bioinform2022
35398776Genomic evolution of the Coronaviridae family.Virology2022
30660046Classification of human Herpesviridae proteins using Domain-architecture Aware Inference of Orthologs (DAIO).Virology2019
30593617Hepatitis C Virus Database and Bioinformatics Analysis Tools in the Virus Pathogen Resource (ViPR).Methods Mol Biol2019
27679478Influenza Research Database: An integrated bioinformatics resource for influenza virus research.Nucleic Acids Res2017
24495517BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.J Biomed Semantics2014
25148856Phylogenomic analysis of glycogen branching and debranching enzymatic duo.BMC Evol Biol2014
24742328Structural genomics analysis of uncharacterized protein families overrepresented in human gut bacteria identifies a novel glycoside hydrolase.BMC Bioinformatics2014
23398680The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies.J Biomed Semantics2013
24077226Divergent evolution of protein conformational dynamics in dihydrofolate reductase.Nat Struct Mol Biol2013
23677614aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity.Nucleic Acids Res2013
23668630Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient.BMC Bioinformatics2013
23457257Evolution of the animal apoptosis network.Cold Spring Harb Perspect Biol2013
23166479This Déjà vu feeling--analysis of multidomain protein evolution in eukaryotic genomes.PLoS Comput Biol2012
20961957TOPSAN: a dynamic web database for structural genomics.Nucleic Acids Res2011
21541028A mighty small heart: the cardiac proteome of adult Drosophila melanogaster.PLoS One2011
21110998TIR domain-containing adaptor SARM is a late addition to the ongoing microbe-host dialog.Dev Comp Immunol2011
21241503Strong functional patterns in the evolution of eukaryotic genomes revealed by the reconstruction of ancestral protein domain repertoires.Genome Biol2011
20864446GreenPhylDB v2.0: comparative and functional genomics in plants.Nucleic Acids Res2011
20195594Domain architecture evolution of pattern-recognition receptors.Immunogenetics2010
20727200The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*.J Biomed Semantics2010
20795673Activation and specificity of human caspase-10.Biochemistry2010
19149488Evolution of the human ion channel set.Comb Chem High Throughput Screen2009
19860910phyloXML: XML for evolutionary biology and comparative genomics.BMC Bioinformatics2009
18680598Novel genes dramatically alter regulatory network topology in amphioxus.Genome Biol2008
18562680The amphioxus genome illuminates vertebrate origins and cephalochordate biology.Genome Res2008
17958905Surprising complexity of the ancestral apoptosis network.Genome Biol2007
16901231Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA).OMICS2006
15044241LumberJack: a heuristic tool for sequence alignment exploration and phylogenetic inference.Bioinformatics2004
12028595RIO: analyzing proteomes by automated phylogenomics using resampled inference of orthologs.BMC Bioinformatics2002
11590098A simple algorithm to infer gene duplication and speciation events on a gene tree.Bioinformatics2001
11287624Immune system dysfunction and autoimmune disease in mice lacking Emk (Par-1) protein kinase.Mol Cell Biol2001
11301314ATV: display and manipulation of annotated phylogenetic trees.Bioinformatics2001
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Collaborators

Adam Godzik
University of California Riverside
Co-authored papers 12
Richard H Scheuermann
J. Craig Venter Institute
Co-authored papers 6
Rutger A Vos
Naturalis Biodiversity Center
Co-authored papers 4
Yasunori Yamamoto
Database Center for Life Science, Joint Support-Center for Data Science Research
Co-authored papers 3
Mark D Wilkinson
Universidad Politecnica de Madrid (UPM)
Co-authored papers 3
Raoul J P Bonnal
National Institute for Molecular Genetics "Romeo ed Enrica Invernizzi"
Co-authored papers 3
Pjotr Prins
Wageningen University & Research
Co-authored papers 3
Bruno Aranda
European Bioinformatics Institute
Co-authored papers 3
Toshiaki Katayama
Database Center for Life Science
Co-authored papers 3
Shuichi Kawashima
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Co-authored papers 3
Hilmar Lapp
Duke University
Co-authored papers 3
Jan Aerts
Co-authored papers 3
Soichi Ogishima
Tohoku University Graduate School of Medicine
Co-authored papers 2
Keiichiro Ono
university of california san diego
Co-authored papers 2
Maulik Shukla
University of Chicago
Co-authored papers 2
Rick Stevens
Argonne National Laboratory
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Jerven Bolleman
carnegie mellon university - 1 rue Michel Servet CH-1 Geneva 4
Co-authored papers 2
James J Davis
University of Chicago
Co-authored papers 2
Peter J A Cock
James Hutton Institute
Co-authored papers 2
Chisato Yamasaki
Osaka University
Co-authored papers 2
Erick Antezana
Norwegian University of Science and Technology
Co-authored papers 2
René Ranzinger
Co-authored papers 2
William S York
Co-authored papers 2
Kiyoko F Aoki-Kinoshita
Co-authored papers 2
Marc Robinson-Rechavi
University of Lausanne
Co-authored papers 1
Constantina Bakolitsa
University of California berkeley
Co-authored papers 1
Nicolle H Packer
Co-authored papers 1
Finn Hallb????k
Uppsala University
Co-authored papers 1
James Taylor
Johns Hopkins University
Co-authored papers 1
Ronald W Kenyon
Co-authored papers 1
Release 1.2