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Author Details

David Feny??
Institute for Systems Genetics, NYU Grossman School of Medicine
1989
196
53
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36798364Modulation of GPR133 (ADGRD1) Signaling by its Intracellular Interaction Partner Extended Synaptotagmin 1 (ESYT1).bioRxiv2023
37857377Proteogenomics Reveal the Overexpression of HLA-I in Cancer.J Proteome Res2023
38009415Proteogenomics unveils mechanistic insights to precision oncology.Clin Transl Med2023
37990633Mitochondrial and immune response dysregulation in melanoma recurrence.Clin Transl Med2023
37880276MED19 encodes two unique protein isoforms that confer prostate cancer growth under low androgen through distinct gene expression programs.Sci Rep2023
37781609Engineered transcription-associated Cas9 targeting in eukaryotic cells.bioRxiv2023
37394063PhosphoDisco: A Toolkit for Co-regulated Phosphorylation Module Discovery in Phosphoproteomic Data.Mol Cell Proteomics2023
37075754KaryoCreate: A CRISPR-based technology to study chromosome-specific aneuploidy by targeting human centromeres.Cell2023
37131623<i>In vivo</i> metabolomics identifies CD38 as an emergent vulnerability in <i>LKB1</i> -mutant lung cancer.bioRxiv2023
36624151Cell-type-specific prediction of 3D chromatin organization enables high-throughput in silico genetic screening.Nat Biotechnol2023
37310664Transposon insertion profiling by sequencing (TIPseq) identifies novel LINE-1 insertions in human sperm.J Assist Reprod Genet2023
36798364Modulation of GPR133 (ADGRD1) Signaling by its Intracellular Interaction Partner Extended Synaptotagmin 1 (ESYT1).bioRxiv2023
37370601Simultaneous Quantitative SARS-CoV-2 Antigen and Host Antibody Detection and Pre-Screening Strategy at the Point of Care.Bioengineering (Basel)2023
37365013Longitudinal gut microbiome analyses and blooms of pathogenic strains during lupus disease flares.Ann Rheum Dis2023
37354459PTK7 is a positive allosteric modulator of GPR133 signaling in glioblastoma.Cell Rep2023
37541199Proteogenomic analysis of chemo-refractory high-grade serous ovarian cancer.Cell2023
37857377Proteogenomics Reveal the Overexpression of HLA-I in Cancer.J Proteome Res2023
38009415Proteogenomics unveils mechanistic insights to precision oncology.Clin Transl Med2023
37990633Mitochondrial and immune response dysregulation in melanoma recurrence.Clin Transl Med2023
37781609Engineered transcription-associated Cas9 targeting in eukaryotic cells.bioRxiv2023
37880276MED19 encodes two unique protein isoforms that confer prostate cancer growth under low androgen through distinct gene expression programs.Sci Rep2023
37541199Proteogenomic analysis of chemo-refractory high-grade serous ovarian cancer.Cell2023
37394063PhosphoDisco: A Toolkit for Co-regulated Phosphorylation Module Discovery in Phosphoproteomic Data.Mol Cell Proteomics2023
37354459PTK7 is a positive allosteric modulator of GPR133 signaling in glioblastoma.Cell Rep2023
37310664Transposon insertion profiling by sequencing (TIPseq) identifies novel LINE-1 insertions in human sperm.J Assist Reprod Genet2023
37075754KaryoCreate: A CRISPR-based technology to study chromosome-specific aneuploidy by targeting human centromeres.Cell2023
37370601Simultaneous Quantitative SARS-CoV-2 Antigen and Host Antibody Detection and Pre-Screening Strategy at the Point of Care.Bioengineering (Basel)2023
37365013Longitudinal gut microbiome analyses and blooms of pathogenic strains during lupus disease flares.Ann Rheum Dis2023
37131623<i>In vivo</i> metabolomics identifies CD38 as an emergent vulnerability in <i>LKB1</i> -mutant lung cancer.bioRxiv2023
36624151Cell-type-specific prediction of 3D chromatin organization enables high-throughput in silico genetic screening.Nat Biotechnol2023
34757067Deep Learning and Pathomics Analyses Reveal Cell Nuclei as Important Features for Mutation Prediction of BRAF-Mutated Melanomas.J Invest Dermatol2022
35849436Prediction of Maternal Hemorrhage Using Machine Learning: Retrospective Cohort Study.J Med Internet Res2022
36106402Baseline Serum Autoantibody Signatures Predict Recurrence and Toxicity in Melanoma Patients Receiving Adjuvant Immune Checkpoint Blockade.Clin Cancer Res2022
35881802<i>Staphylococcus aureus</i> induces a muted host response in human blood that blunts the recruitment of neutrophils.Proc Natl Acad Sci U S A2022
35750561Machine learning decision support model for radical cystectomy discharge planning.Urol Oncol2022
35365626USP1-trapping lesions as a source of DNA replication stress and genomic instability.Nat Commun2022
35732149When blockchain meets artificial intelligence: An application to cancer histopathology.Cell Rep Med2022
36129397Proteogenomic analysis of cancer aneuploidy and normal tissues reveals divergent modes of gene regulation across cellular pathways.Elife2022
34860652A Gene Selection Method Based on Outliers for Breast Cancer Subtype Classification.IEEE/ACM Trans Comput Biol Bioinform2022
35169076LINE-1 expression in cancer correlates with p53 mutation, copy number alteration, and S phase checkpoint.Proc Natl Acad Sci U S A2022
34757067Deep Learning and Pathomics Analyses Reveal Cell Nuclei as Important Features for Mutation Prediction of BRAF-Mutated Melanomas.J Invest Dermatol2022
35732149When blockchain meets artificial intelligence: An application to cancer histopathology.Cell Rep Med2022
35365626USP1-trapping lesions as a source of DNA replication stress and genomic instability.Nat Commun2022
35750561Machine learning decision support model for radical cystectomy discharge planning.Urol Oncol2022
35849436Prediction of Maternal Hemorrhage Using Machine Learning: Retrospective Cohort Study.J Med Internet Res2022
36106402Baseline Serum Autoantibody Signatures Predict Recurrence and Toxicity in Melanoma Patients Receiving Adjuvant Immune Checkpoint Blockade.Clin Cancer Res2022
36129397Proteogenomic analysis of cancer aneuploidy and normal tissues reveals divergent modes of gene regulation across cellular pathways.Elife2022
35881802<i>Staphylococcus aureus</i> induces a muted host response in human blood that blunts the recruitment of neutrophils.Proc Natl Acad Sci U S A2022
34860652A Gene Selection Method Based on Outliers for Breast Cancer Subtype Classification.IEEE/ACM Trans Comput Biol Bioinform2022
35169076LINE-1 expression in cancer correlates with p53 mutation, copy number alteration, and S phase checkpoint.Proc Natl Acad Sci U S A2022
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Collaborators

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Brigham Young University
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Emily Kawaler
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Kuan-Lin Huang
Icahn School of Medicine at Mount Sinai
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Gy??rgy Marko-Varga
Clinical Protein Science & Imaging, Biomedical Centre, Lund University
Co-authored papers 8
Bing Zhang
Baylor College of Medicine
Co-authored papers 8
Kelly R Molloy
The Rockefeller University
Co-authored papers 8
Deepak Mani
Co-authored papers 8
Shunqiang Li
Co-authored papers 8
Karl R Clauser
Co-authored papers 8
Michael C Wendl
Washington University in St Louis
Co-authored papers 7
Release 1.2