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Author Details

Benjamin D Greenbaum
Memorial Sloan Kettering Cancer Center
2003
88
36
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36927002Novel Genetic Subtypes of Urothelial Carcinoma With Differential Outcomes on Immune Checkpoint Blockade.J Clin Oncol2023
37609261Interferon response and epigenetic modulation by <i>SMARCA4</i> mutations drive ovarian tumor immunogenicity.bioRxiv2023
37872381Systematic evaluation of AML-associated antigens identifies anti-U5 SNRNP200 therapeutic antibodies for the treatment of acute myeloid leukemia.Nat Cancer2023
37494469Tissue-specific features of the T cell repertoire after allogeneic hematopoietic cell transplantation in human and mouse.Sci Transl Med2023
37292765Cancer cells co-evolve with retrotransposons to mitigate viral mimicry.bioRxiv2023
37024582Genomic and transcriptomic analysis of checkpoint blockade response in advanced non-small cell lung cancer.Nat Genet2023
37159385High-throughput interrogation of immune responses using the Human Immune Profiling Pipeline.STAR Protoc2023
37474509Identification of transcriptional programs using dense vector representations defined by mutual information with GeneVector.Nat Commun2023
37165196Personalized RNA neoantigen vaccines stimulate T cells in pancreatic cancer.Nature2023
37327118Immune profiling after allogeneic hematopoietic cell transplantation in pediatric acute myeloid leukemia.Blood Adv2023
34644393Clinical and Genomic Characterization of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS CoV-2) Infections in mRNA Vaccinated Health Care Personnel in New York City.Clin Infect Dis2022
35679859Impaired humoral immunity is associated with prolonged COVID-19 despite robust CD8 T cell responses.Cancer Cell2022
35383292The genotypes and phenotypes of missense mutations in the proline domain of the p53 protein.Cell Death Differ2022
35708912Satellite repeat RNA expression in epithelial ovarian cancer associates with a tumor-immunosuppressive phenotype.J Clin Invest2022
35545680Fundamental immune-oncogenicity trade-offs define driver mutation fitness.Nature2022
35767426Systemic and Oligo-Acquired Resistance to PD-(L)1 Blockade in Lung Cancer.Clin Cancer Res2022
35704596Calreticulin mutant myeloproliferative neoplasms induce MHC-I skewing, which can be overcome by an optimized peptide cancer vaccine.Sci Transl Med2022
35641605Author Correction: Fundamental immune-oncogenicity trade-offs define driver mutation fitness.Nature2022
35789859Y RNAs are conserved endogenous RIG-I ligands across RNA virus infection and are targeted by HIV-1.iScience2022
35589842Neoantigen quality predicts immunoediting in survivors of pancreatic cancer.Nature2022
35972475Perfecting antigen prediction.J Exp Med2022
35320348Reverse Transcriptase Inhibition Disrupts Repeat Element Life Cycle in Colorectal Cancer.Cancer Discov2022
34937774sgDI-tector: defective interfering viral genome bioinformatics for detection of coronavirus subgenomic RNAs.RNA2022
33184911Frontiers in cancer immunotherapy-a symposium report.Ann N Y Acad Sci2021
33555346The Heterogeneous Landscape and Early Evolution of Pathogen-Associated CpG Dinucleotides in SARS-CoV-2.Mol Biol Evol2021
35122060Radiation therapy enhances immunotherapy response in microsatellite stable colorectal and pancreatic adenocarcinoma in a phase II trial.Nat Cancer2021
34473697Probing T-cell response by sequence-based probabilistic modeling.PLoS Comput Biol2021
34630437Lynch Syndrome and MSI-H Cancers: From Mechanisms to "Off-The-Shelf" Cancer Vaccines.Front Immunol2021
34075878HNRNPM controls circRNA biogenesis and splicing fidelity to sustain cancer cell fitness.Elife2021
34171309Pharmacologic modulation of RNA splicing enhances anti-tumor immunity.Cell2021
32511407The heterogeneous landscape and early evolution of pathogen-associated CpG dinucleotides in SARS-CoV-2.bioRxiv2020
31836853Role of AID in the temporal pattern of acquisition of driver mutations in multiple myeloma.Leukemia2020
31857430Mutation-derived Neoantigen-specific T-cell Responses in Multiple Myeloma.Clin Cancer Res2020
32096295Genomic analysis of metastatic melanoma in an adult with giant congenital melanocytic nevus.Pigment Cell Melanoma Res2020
33298930Temporal and spatial heterogeneity of host response to SARS-CoV-2 pulmonary infection.Nat Commun2020
33259803Shared Immunogenic Poly-Epitope Frameshift Mutations in Microsatellite Unstable Tumors.Cell2020
32976222An integrative approach identifies dysregulated long non-coding RNAs as microRNA decoys during nevus to melanoma transformation.Melanoma Res2020
32714120The Heterogeneous Landscape and Early Evolution of Pathogen-Associated CpG Dinucleotides in SARS-CoV-2.SSRN2020
32766600Temporal and Spatial Heterogeneity of Host Response to SARS-CoV-2 Pulmonary Infection.medRxiv2020
32505227Immunology of COVID-19: Current State of the Science.Immunity2020
32117226Computational Prediction and Validation of Tumor-Associated Neoantigens.Front Immunol2020
32561401COVID-19 in patients with lung cancer.Ann Oncol2020
30626867A tumor-specific endogenous repetitive element is induced by herpesviruses.Nat Commun2019
31409730Correction for Sobel Leonard et al., "Transmission Bottleneck Size Estimation from Pathogen Deep-Sequencing Data, with an Application to Human Influenza A Virus".J Virol2019
31406345Reply to 'Reconciling disparate estimates of viral genetic diversity during human influenza infections'.Nat Genet2019
29217585Patient HLA class I genotype influences cancer response to checkpoint blockade immunotherapy.Science2018
30177761Influenza virus infection causes global RNAPII termination defects.Nat Struct Mol Biol2018
29950349Therapeutic Immune Modulation against Solid Cancers with Intratumoral Poly-ICLC: A Pilot Trial.Clin Cancer Res2018
29642008Global Cancer Transcriptome Quantifies Repeat Element Polarization between Immunotherapy Responsive and T Cell Suppressive Classes.Cell Rep2018
29665239FBXW7 regulates a mitochondrial transcription program by modulating MITF.Pigment Cell Melanoma Res2018
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Collaborators

Arnold J Levine
Simons Center for Systems Biology, Institute for Advanced Study
Co-authored papers 13
Elodie Ghedin
National Institute of Allergy and Infectious Diseases, National Institutes of Health
Co-authored papers 7
Raul Rabadan
Columbia University Vagelos College of Physicians and Surgeons
Co-authored papers 5
Ivan Marazzi
Center for Epigenetics and Metabolism, University of California irvine
Co-authored papers 4
Vladimir Makarov
Center for Immunotherapy and Precision-Immuno-Oncology, Cleveland Clinic
Co-authored papers 4
Chaitanya Bandlamudi
Co-authored papers 4
Sacha Gnjatic
The Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai
Co-authored papers 4
Miriam Merad
The Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai
Co-authored papers 4
Timothy A Chan
Cleveland Clinic.
Co-authored papers 4
Andrew Chow
Co-authored papers 4
Nir Hacohen
Broad Institute of MIT and Harvard
Co-authored papers 4
Edward C Holmes
Sydney Institute for Infectious Diseases, The University of Sydney
Co-authored papers 3
Mithat Gonen
Co-authored papers 3
Romain Remark
Co-authored papers 3
Ernesto Guccione
Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai
Co-authored papers 3
Nadeem Riaz
Memorial Sloan Kettering Cancer Center
Co-authored papers 3
Adolfo Garc??a-Sastre
Icahn School of Medicine at Mount Sinai
Co-authored papers 3
Britta Weigelt
Memorial Sloan Kettering Cancer Center
Co-authored papers 3
Hira Rizvi
Druckenmiler Center for Lung Cancer Research, Memorial Sloan Kettering Cancer Center
Co-authored papers 3
Diana Low
Institute of Molecular and Cell Biology (IMCB)
Co-authored papers 3
Jayon Lihm
Co-authored papers 3
Robert Sebra
Icahn School of Medicine at Mount Sinai
Co-authored papers 3
Viviana Simon
Icahn School of Medicine at Mount Sinai
Co-authored papers 2
Shashank Tripathi
Indian Institute of Science
Co-authored papers 2
Judd F Hultquist
Northwestern University Feinberg School of Medicine
Co-authored papers 2
Nan Zhao
Department of Computer Science and Informatics Institute, University of Missouri
Co-authored papers 2
El-Ad David Amir
Co-authored papers 2
Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 2
Natasha Moshkina
Icahn School of Medicine at Mount Sinai
Co-authored papers 2
Gregory J Riely
Memorial Sloan Kettering Cancer Center
Co-authored papers 2
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