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Author Details

Ludovic Gillet
ETH Zurich
2002
42
28
PMIDPaper TitleJournal TitlePublished Year
37861398Proteomic Profiling of Advanced Melanoma Patients to Predict Therapeutic Response to Anti-PD-1 Therapy.Clin Cancer Res2024
36515990Meiotic nuclear pore complex remodeling provides key insights into nuclear basket organization.J Cell Biol2023
37485750Genetic effects on molecular network states explain complex traits.Mol Syst Biol2023
35194207Combining CRISPRi and metabolomics for functional annotation of compound libraries.Nat Chem Biol2022
35574625The impact of genomic variation on protein phosphorylation states and regulatory networks.Mol Syst Biol2022
35396578Author Correction: Combining CRISPRi and metabolomics for functional annotation of compound libraries.Nat Chem Biol2022
33357446Dynamic 3D proteomes reveal protein functional alterations at high resolution in situ.Cell2021
33535049N<sup>α</sup>-terminal acetylation of proteins by NatA and NatB serves distinct physiological roles in Saccharomyces cerevisiae.Cell Rep2021
33687722System-Wide Profiling of Protein Complexes Via Size Exclusion Chromatography-Mass Spectrometry (SEC-MS).Methods Mol Biol2021
34349113Puf6 primes 60S pre-ribosome nuclear export at low temperature.Nat Commun2021
34318747Processing of the ribosomal ubiquitin-like fusion protein FUBI-eS30/FAU is required for 40S maturation and depends on USP36.Elife2021
32129764USP16 counteracts mono-ubiquitination of RPS27a and promotes maturation of the 40S ribosomal subunit.Elife2020
31909713The GTPase Nog1 co-ordinates the assembly, maturation and quality control of distant ribosomal functional centers.Elife2020
32094660Publisher Correction: OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data.Nat Biotechnol2020
33333025Maturation Kinetics of a Multiprotein Complex Revealed by Metabolic Labeling.Cell2020
30975897Sensitive Quantitative Proteomics of Human Hematopoietic Stem and Progenitor Cells by Data-independent Acquisition Mass Spectrometry.Mol Cell Proteomics2019
31733513Quantitative Proteome Landscape of the NCI-60 Cancer Cell Lines.iScience2019
31495056High-throughput proteomic analysis of FFPE tissue samples facilitates tumor stratification.Mol Oncol2019
30104418Data-independent acquisition-based SWATH-MS for quantitative proteomics: a tutorial.Mol Syst Biol2018
28603547A better scoring model for de novo peptide sequencing: the symmetric difference between explained and measured masses.Algorithms Mol Biol2017
27049628Mass Spectrometry Applied to Bottom-Up Proteomics: Entering the High-Throughput Era for Hypothesis Testing.Annu Rev Anal Chem (Palo Alto Calif)2016
27701404A multicenter study benchmarks software tools for label-free proteome quantification.Nat Biotechnol2016
27479329TRIC: an automated alignment strategy for reproducible protein quantification in targeted proteomics.Nat Methods2016
25561506Reproducible and consistent quantification of the Saccharomyces cerevisiae proteome by SWATH-mass spectrometry.Mol Cell Proteomics2015
26154972An open-source computational and data resource to analyze digital maps of immunopeptidomes.Elife2015
26094805Absolute Proteome Composition and Dynamics during Dormancy and Resuscitation of Mycobacterium tuberculosis.Cell Host Microbe2015
25652787Quantitative variability of 342 plasma proteins in a human twin population.Mol Syst Biol2015
25675208Building high-quality assay libraries for targeted analysis of SWATH MS data.Nat Protoc2015
25730263Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome maps.Nat Med2015
24727770OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data.Nat Biotechnol2014
25492886Phosphoproteomic analyses reveal novel cross-modulation mechanisms between two signaling pathways in yeast.Mol Syst Biol2014
24741114Glycoproteomic analysis of prostate cancer tissues by SWATH mass spectrometry discovers N-acylethanolamine acid amidase and protein tyrosine kinase 7 as signatures for tumor aggressiveness.Mol Cell Proteomics2014
24623587Conserved peptide fragmentation as a benchmarking tool for mass spectrometers and a discriminating feature for targeted proteomics.Mol Cell Proteomics2014
23322582Quantitative measurements of N-linked glycoproteins in human plasma by SWATH-MS.Proteomics2013
24162925Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system.Nat Methods2013
22261725Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis.Mol Cell Proteomics2012
18364346In-cell selectivity profiling of serine protease inhibitors by activity-based proteomics.Mol Cell Proteomics2008
17320292Crosslinking of the NER damage recognition proteins XPC-HR23B, XPA and RPA to photoreactive probes that mimic DNA damages.Biochim Biophys Acta2007
16464005Molecular mechanisms of mammalian global genome nucleotide excision repair.Chem Rev2006
16085492Homologous recombination rescues mismatch-repair-dependent cytotoxicity of S(N)1-type methylating agents in S. cerevisiae.Curr Biol2005
15814813Site-specific incorporation of N-(deoxyguanosin-8-yl)-2-acetylaminofluorene (dG-AAF) into oligonucleotides using modified 'ultra-mild' DNA synthesis.Nucleic Acids Res2005
12443059Preparation of C8-amine and acetylamine adducts of 2'-deoxyguanosine suitably protected for DNA synthesis.Org Lett2002
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Collaborators

Ruedi Aebersold
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 28
Ben C Collins
Queen's University of Belfast
Co-authored papers 11
Paola Picotti
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 5
Yansheng Liu
Yale University School of Medicine
Co-authored papers 4
Alexander Leitner
ETH Zurich
Co-authored papers 4
Lukas Reiter
Co-authored papers 3
Tiannan Guo
Westlake University
Co-authored papers 3
Julio Saez-Rodriguez
Institute of Computational Biomedicine, Heidelberg University
Co-authored papers 3
Bernd Wollscheid
ETH Zurich
Co-authored papers 2
Matthias Gstaiger
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 2
Olga Vitek
Khoury College of Computer Sciences, Northeastern University
Co-authored papers 2
Peter J Wild
Co-authored papers 2
Andreas Beyer
University of Cologne
Co-authored papers 2
Brendan MacLean
Co-authored papers 2
Reinhard Dummer
University Hospital Zurich
Co-authored papers 1
Alessandro Ori
Leibniz Institute on Aging - Fritz Lipmann Institute (FLI)
Co-authored papers 1
Chris Sander
Broad Institute of MIT and Harvard
Co-authored papers 1
Robert L Moritz
Institute for Systems Biology
Co-authored papers 1
Tim D Spector
King's College London
Co-authored papers 1
Lijun Chen
Co-authored papers 1
Sangtae Kim
Co-authored papers 1
Augustin Luna
Harvard Medical School
Co-authored papers 1
Anthony W Purcell
Monash Biomedicine Discovery Institute, Monash University
Co-authored papers 1
Ruth H??ttenhain
Quantitative Biosciences Institute (QBI), University of California san francisco
Co-authored papers 1
William C Reinhold
Center for Cancer Research, National Cancer Institute
Co-authored papers 1
Sandra Goetze
ETH Zurich
Co-authored papers 1
Alessandro Sette
Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology
Co-authored papers 1
Peer Bork
University of Wurzburg
Co-authored papers 1
Tobias Weiss
Westlake University
Co-authored papers 1
Laurence Calzone
Institut Curie, Universite PSL
Co-authored papers 1
Release 1.2