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Author Details

Yupeng He
Salk Institute for Biological Studies
2012
26
19
PMIDPaper TitleJournal TitlePublished Year
36690790Author Correction: PHYTOCHROME-INTERACTING FACTORs trigger environmentally responsive chromatin dynamics in plants.Nat Genet2023
36690790Author Correction: PHYTOCHROME-INTERACTING FACTORs trigger environmentally responsive chromatin dynamics in plants.Nat Genet2023
35474001Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2022
35474001Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2022
33398137Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development.Nature2021
34140685PHYTOCHROME-INTERACTING FACTORs trigger environmentally responsive chromatin dynamics in plants.Nat Genet2021
33398137Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development.Nature2021
34140685PHYTOCHROME-INTERACTING FACTORs trigger environmentally responsive chromatin dynamics in plants.Nat Genet2021
32728242Spatiotemporal DNA methylome dynamics of the developing mouse fetus.Nature2020
33037424Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development.Nature2020
32728249Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2020
32728242Spatiotemporal DNA methylome dynamics of the developing mouse fetus.Nature2020
33037424Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development.Nature2020
32728249Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2020
31418686Epigenetic silencing of a multifunctional plant stress regulator.Elife2019
31418686Epigenetic silencing of a multifunctional plant stress regulator.Elife2019
29688374Finding relevant biomedical datasets: the UC San Diego solution for the bioCADDIE Retrieval Challenge.Database (Oxford)2018
29688374Finding relevant biomedical datasets: the UC San Diego solution for the bioCADDIE Retrieval Challenge.Database (Oxford)2018
27840020Functional Human Oocytes Generated by Transfer of Polar Body Genomes.Cell Stem Cell2017
28798132Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex.Science2017
27840020Functional Human Oocytes Generated by Transfer of Polar Body Genomes.Cell Stem Cell2017
28193886Improved regulatory element prediction based on tissue-specific local epigenomic signatures.Proc Natl Acad Sci U S A2017
28193886Improved regulatory element prediction based on tissue-specific local epigenomic signatures.Proc Natl Acad Sci U S A2017
28798132Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex.Science2017
27419873Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions.Cell2016
27428751Characterization of Greater Middle Eastern genetic variation for enhanced disease gene discovery.Nat Genet2016
27424783Molecular Criteria for Defining the Naive Human Pluripotent State.Cell Stem Cell2016
27419873Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions.Cell2016
26605523Corrigendum: Human body epigenome maps reveal noncanonical DNA methylation variation.Nature2016
26605523Corrigendum: Human body epigenome maps reveal noncanonical DNA methylation variation.Nature2016
27428751Characterization of Greater Middle Eastern genetic variation for enhanced disease gene discovery.Nat Genet2016
27424783Molecular Criteria for Defining the Naive Human Pluripotent State.Cell Stem Cell2016
26030523Human body epigenome maps reveal noncanonical DNA methylation variation.Nature2015
25945737An alternative pluripotent state confers interspecies chimaeric competency.Nature2015
26077819Non-CG Methylation in the Human Genome.Annu Rev Genomics Hum Genet2015
26030523Human body epigenome maps reveal noncanonical DNA methylation variation.Nature2015
26099518MOST+: A de novo motif finding approach combining genomic sequence and heterogeneous genome-wide signatures.BMC Genomics2015
26077819Non-CG Methylation in the Human Genome.Annu Rev Genomics Hum Genet2015
26099518MOST+: A de novo motif finding approach combining genomic sequence and heterogeneous genome-wide signatures.BMC Genomics2015
25945737An alternative pluripotent state confers interspecies chimaeric competency.Nature2015
23802565Proteogenomic database construction driven from large scale RNA-seq data.J Proteome Res2014
23802565Proteogenomic database construction driven from large scale RNA-seq data.J Proteome Res2014
24142994An automated proteogenomic method uses mass spectrometry to reveal novel genes in Zea mays.Mol Cell Proteomics2014
25192464The developmental potential of iPSCs is greatly influenced by reprogramming factor selection.Cell Stem Cell2014
25008523Abnormalities in human pluripotent cells due to reprogramming mechanisms.Nature2014
25192464The developmental potential of iPSCs is greatly influenced by reprogramming factor selection.Cell Stem Cell2014
25008523Abnormalities in human pluripotent cells due to reprogramming mechanisms.Nature2014
24142994An automated proteogenomic method uses mass spectrometry to reveal novel genes in Zea mays.Mol Cell Proteomics2014
23739894Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population.Genome Res2013
23739894Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population.Genome Res2013
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Collaborators

Joseph R Ecker
The Salk Institute for Biological Studies
Co-authored papers 20
Joseph R Nery
The Salk Institute for Biological Studies
Co-authored papers 15
Bing Ren
Center for Epigenomics, University of California San Diego
Co-authored papers 9
Huaming Chen
The Salk Institute for Biological Studies
Co-authored papers 7
Diane E Dickel
Co-authored papers 6
Axel Visel
Co-authored papers 6
David U Gorkin
Center for Epigenomics, University of California San Diego
Co-authored papers 6
Len A Pennacchio
Lawrence Berkeley National Laboratory
Co-authored papers 6
Manoj Hariharan
Co-authored papers 5
Brian A Williams
Co-authored papers 5
Yin Shen
Wenzhou Medical University
Co-authored papers 5
Ah Young Lee
Co-authored papers 4
Zhuzhu Zhang
The Salk Institute for Biological Studies
Co-authored papers 4
Mark A Urich
The Salk Institute for Biological Studies
Co-authored papers 4
Matthew D Schultz
Co-authored papers 4
J Michael Cherry
Stanford University
Co-authored papers 4
Yuan Zhao
Co-authored papers 3
Bin Li
Co-authored papers 3
Terrence J Sejnowski
Co-authored papers 3
Eran A Mukamel
University of California San Diego
Co-authored papers 3
Wei Wang
Co-authored papers 3
Henry Amrhein
Co-authored papers 3
Diane Trout
Co-authored papers 3
Robert J Schmitz
University of Georgia
Co-authored papers 3
Hui Huang
Co-authored papers 3
Mark Gerstein
Yale University
Co-authored papers 2
Ross C Hardison
Co-authored papers 2
J Seth Strattan
Co-authored papers 2
Jessika Adrian
Co-authored papers 2
Elizabeth A Lee
Co-authored papers 2
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